{"id":"W2074171589","doi":"10.1371/journal.pone.0027754","title":"Gene Decay in Shigella as an Incipient Stage of Host-Adaptation","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Specialized Research Fund for the Doctoral Program of Higher Education of China; National Natural Science Foundation of China; Harbin Medical University","keywords":"Biology; Pseudogene; Gene; Shigella; Operon; Genetics; Genome; Shigella flexneri; Mutant; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003634229,0.0002655668,0.0003099961,0.0004734831,0.0002096219,0.0004284212,0.0002613901,0.0003455807,0.0007913557],"category_scores_gemma":[0.0007220653,0.0001004734,0.0002599928,0.0004196745,0.0003623772,0.0004808786,0.000425374,0.0003546348,0.0002336733],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003546714,"about_ca_system_score_gemma":0.0002746777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005254265,"about_ca_topic_score_gemma":0.0004334614,"domain_scores_codex":[0.9997931,0.00002682036,0.00002138981,0.00005912222,0.00004626698,0.00005343367],"domain_scores_gemma":[0.9993147,0.0001578106,0.0002088729,0.00008409263,0.0001719222,0.00006268645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004616113,0.00004508195,0.09559187,0.0003505982,0.00005049671,0.0004005209,0.0004670478,0.0004370261,0.8903502,0.0006120818,0.00008722935,0.01114618],"study_design_scores_gemma":[0.0000246064,0.00119999,0.6613802,0.0001186824,0.0002295697,0.003995011,0.00138279,0.004317157,0.3163261,0.001940162,0.009039291,0.0000464707],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960673,0.001447253,0.001873912,0.00003103198,0.000004561343,0.000006332689,0.0001358763,0.00003542247,0.0003983165],"genre_scores_gemma":[0.9977843,0.0003995264,0.001056237,0.00002457933,0.000003821871,0.000009743819,0.0003933025,0.00001608425,0.0003122919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007913557,"threshold_uncertainty_score":0.002647281,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08406761635251496,"score_gpt":0.282014227765201,"score_spread":0.197946611412686,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}