{"id":"W2074194695","doi":"10.1371/journal.pone.0078749","title":"The Critical Role of DNA Extraction for Detection of Mycobacteria in Tissues","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"DNA extraction; DNA; Isoamyl alcohol; Biology; Nucleic acid; Polymerase chain reaction; genomic DNA; Paratuberculosis; Restriction digest; Bacteria; Chromatography; Microbiology; Molecular biology; Mycobacterium; Restriction enzyme; Chemistry; Biochemistry; Gene; Genetics; Alcohol","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005431256,0.001134113,0.0006425416,0.001331373,0.0006729926,0.001858446,0.0009764927,0.001243013,0.001854059],"category_scores_gemma":[0.01022448,0.0005089869,0.0004860098,0.0006386754,0.002130548,0.001327104,0.0007035479,0.001337524,0.002105771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005529172,"about_ca_system_score_gemma":0.001424065,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003987424,"about_ca_topic_score_gemma":0.0008007506,"domain_scores_codex":[0.9941393,0.002663822,0.0006029359,0.001025935,0.00138429,0.0001836089],"domain_scores_gemma":[0.9803485,0.01258216,0.001980926,0.001533638,0.003210473,0.0003443433],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001422621,0.00003778984,0.003351275,0.0008424594,0.00002280287,0.0001655173,0.0001698323,0.0001842971,0.972581,0.0003922406,0.0001783603,0.0219322],"study_design_scores_gemma":[0.000009629877,0.0004162762,0.00421838,0.0002483576,0.00006270617,0.001158697,0.0001432583,0.001024676,0.985045,0.0008049026,0.006841101,0.00002695959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.325517,0.03540034,0.6249483,0.003466373,0.0009938289,0.001536026,0.001073855,0.001221337,0.005842965],"genre_scores_gemma":[0.4455477,0.01319032,0.5340745,0.001586916,0.0003727486,0.0009284226,0.001144667,0.0003095075,0.002845173],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.005431256,"threshold_uncertainty_score":0.02872354,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03679633708976249,"score_gpt":0.3057079431830032,"score_spread":0.2689116060932407,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}