{"id":"W2074434214","doi":"10.4161/rna.22896","title":"The A-nucleotide preference of HIV-1 in the context of its structured RNA genome","year":2012,"lang":"en","type":"article","venue":"RNA Biology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Biology; Nucleotide; Genome; RNA; Genetics; Context (archaeology); Nucleic acid secondary structure; Nucleic acid structure; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001071337,0.0001296663,0.0001147835,0.0001814167,0.0001929599,0.0003550004,0.0001358423,0.0002024419,0.0005690746],"category_scores_gemma":[0.0003282865,0.0001121242,0.0001052474,0.0001016245,0.0002317666,0.00017544,0.0001113104,0.0001927502,0.0002232103],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000113208,"about_ca_system_score_gemma":0.0001650011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002691995,"about_ca_topic_score_gemma":0.000421649,"domain_scores_codex":[0.9999233,0.00002182649,0.000003793881,0.00002491406,0.0000164603,0.000009594314],"domain_scores_gemma":[0.9998769,0.00004403334,0.00002185414,0.00001666799,0.00001463266,0.00002592828],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000101095,0.0000114839,0.001023792,0.0000180036,0.000005039898,0.00004825154,0.00001789729,0.0008035461,0.9948457,0.001185125,0.00001341326,0.001926666],"study_design_scores_gemma":[0.00003367264,0.0008018297,0.01936962,0.0000215173,0.00005273013,0.001198309,0.0001113405,0.0348675,0.9360499,0.005526822,0.001926934,0.00003979884],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960231,0.0002372824,0.002718774,0.00001874665,0.000005462803,0.000004179108,0.00003985914,0.00001496667,0.0009376251],"genre_scores_gemma":[0.9983245,0.0001046314,0.001291164,0.000009449578,0.000002742428,0.000003039024,0.00003999717,0.000004054952,0.0002205043],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005690746,"threshold_uncertainty_score":0.001903772,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02263216320704969,"score_gpt":0.2483003934798989,"score_spread":0.2256682302728492,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}