{"id":"W2074792363","doi":"10.1074/jbc.m113.491829","title":"Peptidoglycan ld-Carboxypeptidase Pgp2 Influences Campylobacter jejuni Helical Cell Shape and Pathogenic Properties and Provides the Substrate for the dl-Carboxypeptidase Pgp1","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":84,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Peptidoglycan; Tripeptide; Campylobacter jejuni; Mutant; Carboxypeptidase; Biochemistry; Microbiology; Biology; Chemistry; Cell wall; Enzyme; Amino acid; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001149928,0.0003013131,0.0004611856,0.000007426601,0.0003654306,0.0001466521,0.0005369537,0.0002863711,0.00008250501],"category_scores_gemma":[0.0006858864,0.00007748937,0.0002272687,0.0001229752,0.000722224,0.0001000799,0.0001536439,0.0004314646,0.000002255952],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001871877,"about_ca_system_score_gemma":0.00002278589,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002740247,"about_ca_topic_score_gemma":0.00002237371,"domain_scores_codex":[0.99814,0.0002539931,0.0006140457,0.0003652742,0.0001819848,0.0004446563],"domain_scores_gemma":[0.9972889,0.001722097,0.0004637473,0.0001183879,0.0001813774,0.0002254218],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002745329,0.00008082858,0.04056653,0.00003945624,0.0000405208,0.000005797299,0.00008678612,0.000002941558,0.9451407,0.00002428964,0.0001877634,0.01354985],"study_design_scores_gemma":[0.001667706,0.003715661,0.8124051,0.0002186205,0.0003148743,0.001229437,0.003456288,0.001270271,0.1347024,0.003913837,0.03597879,0.00112702],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926898,0.002750152,0.000003815647,0.004061597,0.00007277424,0.0002623014,0.00002273731,0.00002081861,0.0001160052],"genre_scores_gemma":[0.9973421,0.000709379,0.00006793269,0.0008215057,0.0009143433,0.00003076194,0.000007581362,0.000002662476,0.0001037499],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8104383,"threshold_uncertainty_score":0.3159925,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0436040828836475,"score_gpt":0.2228464237765971,"score_spread":0.1792423408929495,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}