{"id":"W2074792363","doi":"10.1074/jbc.m113.491829","title":"Peptidoglycan ld-Carboxypeptidase Pgp2 Influences Campylobacter jejuni Helical Cell Shape and Pathogenic Properties and Provides the Substrate for the dl-Carboxypeptidase Pgp1","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":84,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Peptidoglycan; Tripeptide; Campylobacter jejuni; Mutant; Carboxypeptidase; Biochemistry; Microbiology; Biology; Chemistry; Cell wall; Enzyme; Amino acid; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009726453,0.0003615218,0.0001694646,0.0001595342,0.00009775734,0.00026133,0.0001443704,0.00027536,0.0008891603],"category_scores_gemma":[0.0001556203,0.0001519591,0.0001706061,0.0001225285,0.0002344488,0.0001431502,0.0002330141,0.0004665075,0.0002926125],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003331003,"about_ca_system_score_gemma":0.0002223809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001150926,"about_ca_topic_score_gemma":0.001017934,"domain_scores_codex":[0.9998541,0.00002257894,0.00001327411,0.00002778777,0.00003717078,0.00004509721],"domain_scores_gemma":[0.9998515,0.0000188176,0.00003512323,0.00001366319,0.00001861309,0.000062221],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007008401,0.0000120472,0.0001022771,0.000006797061,7.257559e-7,0.00003015239,0.000003627399,0.00001697133,0.9995777,0.000005915891,0.000009001415,0.0001647929],"study_design_scores_gemma":[0.00001201808,0.0002167158,0.00904744,0.000004147732,0.000007963171,0.0002686003,0.00005966202,0.0007947281,0.9889204,0.00002054884,0.0006421527,0.000005640033],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983041,0.0001848041,0.0004696544,0.00005714071,0.00001320659,0.00001027642,0.0002211839,0.00002546176,0.0007142106],"genre_scores_gemma":[0.99708,0.0000989949,0.0007631029,0.00004158152,0.00000374067,0.00001262411,0.0004074356,0.00001739426,0.001575205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001150926,"threshold_uncertainty_score":0.00297451,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0436040828836475,"score_gpt":0.2228464237765971,"score_spread":0.1792423408929495,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}