{"id":"W2074813718","doi":"10.1101/gr.388902","title":"Retroelement Distributions in the Human Genome: Variations Associated With Age and Proximity to Genes","year":2002,"lang":"en","type":"article","venue":"Genome Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":371,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"BC Cancer Agency; Canadian Institutes of Health Research; Knut och Alice Wallenbergs Stiftelse","keywords":"Biology; Retrotransposon; Alu element; Genome; Transposable element; Genetics; Gene; Human genome; GC-content; Gene density; Genome evolution; Chromosome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008259966,0.00007666043,0.00009049466,0.0000295258,0.0008518528,0.0001373177,0.0002591448,0.00004469914,0.0005434054],"category_scores_gemma":[0.00009351689,0.00002737001,0.00002073879,0.001121869,0.00008199073,0.00004314,0.0001112902,0.0001819561,0.0000314243],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008306442,"about_ca_system_score_gemma":0.000007004823,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002828243,"about_ca_topic_score_gemma":0.005856985,"domain_scores_codex":[0.9985653,0.0002783464,0.0001438717,0.0002448101,0.000384478,0.0003831538],"domain_scores_gemma":[0.999498,0.0001922372,0.00001735513,0.00008717661,0.0001107806,0.00009445756],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001655663,0.001794661,0.0660157,0.00001492946,0.00009656754,0.00007697855,0.005921041,0.00006935872,0.8873773,0.02254144,0.0005392525,0.01553619],"study_design_scores_gemma":[0.0001100852,0.0003258666,0.9870966,0.000005186226,0.000004834236,0.000002674382,0.0002585539,0.00003227324,0.00003970906,0.001368213,0.01067427,0.00008171119],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894581,0.0001553928,0.00001142722,0.008284395,0.000006201982,0.0006123639,0.0001925683,0.00001543237,0.001264101],"genre_scores_gemma":[0.9990132,0.00004500047,0.00006286692,0.00005235599,0.00007075761,0.0001616642,0.0001901582,7.753695e-7,0.0004032488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9210809,"threshold_uncertainty_score":0.6551849,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1012901746558254,"score_gpt":0.304731860185852,"score_spread":0.2034416855300265,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}