{"id":"W2075123468","doi":"10.1017/s1751731114000883","title":"Imputation of ungenotyped parental genotypes in dairy and beef cattle from progeny genotypes","year":2014,"lang":"en","type":"article","venue":"animal","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Imputation (statistics); Genotype; Concordance; Biology; Single-nucleotide polymorphism; Breed; Animal science; Statistics; Genetics; Missing data; Mathematics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008014645,0.0001089807,0.0001277771,0.00002714468,0.00002884604,0.000007620591,0.00009710302,0.0001085677,0.00001877082],"category_scores_gemma":[0.0000329359,0.0001071327,0.00002888134,0.0000442435,0.00008100161,0.000003257661,0.00006722635,0.0000513175,0.000006319657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004899814,"about_ca_system_score_gemma":0.00003563588,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002020627,"about_ca_topic_score_gemma":0.0002167241,"domain_scores_codex":[0.9992954,0.00004817253,0.0001774978,0.0002560103,0.00007658095,0.0001463811],"domain_scores_gemma":[0.9996968,0.00001846925,0.00006130194,0.0001465037,0.00003114974,0.00004578723],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003927289,0.0001373763,0.2396357,0.00003744324,0.00007217262,4.424867e-7,0.0008006465,0.0002453555,0.7377962,0.003059677,0.0001659549,0.01765633],"study_design_scores_gemma":[0.0004632454,0.0005629201,0.9350075,0.000007687085,0.00002094569,0.000002294183,0.00006349913,0.00006193636,0.06100236,0.001843406,0.0008315418,0.0001326881],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967089,0.001396105,0.001125124,0.00002573857,0.0000634001,0.0001228392,0.00002924578,0.000006431518,0.0005221843],"genre_scores_gemma":[0.9897469,0.00002294708,0.009846697,0.00005304941,0.0001530071,0.000008069261,0.0001160851,0.00001468479,0.00003857557],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6953717,"threshold_uncertainty_score":0.4368743,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006851377737510316,"score_gpt":0.2277490036191543,"score_spread":0.220897625881644,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}