{"id":"W2075239409","doi":"10.1128/mbio.01494-14","title":"Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution","year":2014,"lang":"en","type":"article","venue":"mBio","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Medical Research Council; National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; National Institute of General Medical Sciences; Medical Research Council; Canadian Institutes of Health Research; Centers for Disease Control and Prevention; National Science Foundation; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Biology; Microevolution; Outbreak; Cryptococcus gattii; Introgression; Virulence; Clade; Population; Genetics; Genome; Sexual reproduction; Virology; Evolutionary biology; Gene; Phylogenetics; Cryptococcus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001044203,0.0001609023,0.0001435781,0.0002949993,0.0002884738,0.0003520346,0.0001535652,0.0001770469,0.0003943651],"category_scores_gemma":[0.0001811521,0.00009503489,0.0001425917,0.0003391294,0.0001602018,0.0001160441,0.0002859609,0.0003147172,0.00009718803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003175085,"about_ca_system_score_gemma":0.0001816708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003487301,"about_ca_topic_score_gemma":0.005112189,"domain_scores_codex":[0.9999032,0.000005976205,0.000007275306,0.00003826944,0.00001866945,0.00002653333],"domain_scores_gemma":[0.9999071,0.00001186243,0.0000278466,0.00001381247,0.00001451838,0.00002472716],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001888732,0.00005110967,0.08729625,0.00004074966,0.00002844348,0.0005576081,0.0003396461,0.0001898134,0.899343,0.0001400554,0.0001175023,0.01170688],"study_design_scores_gemma":[0.00002495156,0.000393399,0.9037743,0.00002386023,0.00006471203,0.004392623,0.0009766081,0.00214105,0.08459225,0.0002432841,0.003349504,0.00002349242],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992024,0.00004185802,0.000223607,0.000006153801,9.581898e-7,0.000008983202,0.00008498319,0.000007098306,0.0004239208],"genre_scores_gemma":[0.9980865,0.0000589692,0.0008229007,0.00002713298,0.000001878369,0.000009998501,0.0005389309,0.000006988304,0.0004468329],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003487301,"threshold_uncertainty_score":0.006933987,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01624767254253263,"score_gpt":0.263321974755867,"score_spread":0.2470743022133344,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}