{"id":"W2075239409","doi":"10.1128/mbio.01494-14","title":"Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution","year":2014,"lang":"en","type":"article","venue":"mBio","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Medical Research Council; National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; National Institute of General Medical Sciences; Medical Research Council; Canadian Institutes of Health Research; Centers for Disease Control and Prevention; National Science Foundation; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Biology; Microevolution; Outbreak; Cryptococcus gattii; Introgression; Virulence; Clade; Population; Genetics; Genome; Sexual reproduction; Virology; Evolutionary biology; Gene; Phylogenetics; Cryptococcus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002603039,0.000224191,0.0003282765,0.0001024032,0.0004209039,0.00003459363,0.00004226128,0.0001527891,0.00003130366],"category_scores_gemma":[0.0001049219,0.0001959188,0.00005160827,0.0001918642,0.0001189602,0.0001869052,0.0000786194,0.0002053016,0.0000579219],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002419401,"about_ca_system_score_gemma":0.00004038183,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001358585,"about_ca_topic_score_gemma":0.0004072259,"domain_scores_codex":[0.9986227,0.00008265785,0.0003561273,0.0003947512,0.000205235,0.0003385689],"domain_scores_gemma":[0.9994051,0.00006290853,0.0001144816,0.0002059506,0.0001136733,0.0000978134],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009453482,0.0009186142,0.8469565,0.0006155472,0.0003634758,0.00002453634,0.002532873,0.00006643236,0.0329935,0.01966942,0.0514924,0.0434214],"study_design_scores_gemma":[0.002207359,0.0009439261,0.9601145,0.00008860635,0.0001289406,0.0001482781,0.0003040487,0.001371677,0.0004269555,0.001410603,0.03253101,0.0003241017],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9871172,0.0003621654,0.007184471,0.001882945,0.001102932,0.0004867521,0.00001604042,0.0001510224,0.001696439],"genre_scores_gemma":[0.9933051,0.00005201186,0.003504071,0.0004255253,0.0003027898,0.00003952069,0.0001526783,0.00002513754,0.002193149],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.113158,"threshold_uncertainty_score":0.7989338,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01624767254253263,"score_gpt":0.263321974755867,"score_spread":0.2470743022133344,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}