{"id":"W2075759836","doi":"10.1186/gb-2008-9-2-r41","title":"Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans","year":2008,"lang":"en","type":"article","venue":"Genome biology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Broad Institute","keywords":"Biology; Genome; Genetics; Ploidy; Mating type; Chromosome; Cryptococcus neoformans; Serotype; Whole genome sequencing; Virulence; Gene; Virology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001656145,0.0001819472,0.0001296164,0.000747359,0.0002543634,0.0002149388,0.000161927,0.0003797138,0.001297045],"category_scores_gemma":[0.0003290532,0.0001258499,0.0001537291,0.0005961574,0.0002370169,0.00009976113,0.0002540973,0.0003281219,0.0001737352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003234741,"about_ca_system_score_gemma":0.0001280299,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001077183,"about_ca_topic_score_gemma":0.001954711,"domain_scores_codex":[0.9998467,0.00002192546,0.000008401621,0.0000503832,0.00003589372,0.00003675463],"domain_scores_gemma":[0.999781,0.0001051059,0.00004657436,0.00001921119,0.0000253478,0.00002274898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008550118,0.00001180528,0.001692135,0.000024566,0.000006727222,0.00005946502,0.00004216395,0.00004213702,0.9962062,0.00003894641,0.00002165182,0.001768678],"study_design_scores_gemma":[0.00003061727,0.0006382877,0.390111,0.00002379905,0.00009624277,0.002714807,0.0004466098,0.001617436,0.5988778,0.0004133841,0.005009192,0.00002078046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964706,0.0004017001,0.001380659,0.00004186598,0.00000561056,0.00001018213,0.0004043339,0.0000390487,0.001246027],"genre_scores_gemma":[0.9953011,0.0002027419,0.003165112,0.00007740028,0.000005677875,0.00001789988,0.0007472025,0.00001377895,0.0004690693],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001297045,"threshold_uncertainty_score":0.004339099,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04769898574074957,"score_gpt":0.295385630935224,"score_spread":0.2476866451944744,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}