{"id":"W2076169855","doi":"10.1093/molbev/msj042","title":"Genome Plasticity and ori-ter Rebalancing in Salmonella typhi","year":2005,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":54,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Peking University Health Science Center; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; National Natural Science Foundation of China","keywords":"Genome; Biology; Salmonella typhi; Bacterial genome size; Genome size; Genetics; Salmonella; Genome evolution; Serotype; Gene; Bacteria; Microbiology; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002057463,0.0001035851,0.000161466,0.00001845236,0.00007497989,0.000007455449,0.00005616364,0.0001917072,0.00003090156],"category_scores_gemma":[0.00005786265,0.00004760789,0.00002404179,0.00009788605,0.00009881514,0.00003835914,0.0000568703,0.0001090486,0.00001385432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002659718,"about_ca_system_score_gemma":0.000003151502,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001332515,"about_ca_topic_score_gemma":0.0003495642,"domain_scores_codex":[0.9991379,0.0001438097,0.0001613092,0.0002848269,0.00002681112,0.0002453826],"domain_scores_gemma":[0.999767,0.00009246761,0.00004090604,0.00002794481,0.0000140995,0.00005755799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003095028,0.0000170296,0.2841014,0.000002212125,0.00000544034,0.000003567653,0.00002431621,0.00001095085,0.7096462,0.001308263,0.000008947087,0.004840804],"study_design_scores_gemma":[0.0001425688,0.0001242888,0.9938651,0.000005565147,0.000006171317,0.00003190953,0.00003420295,0.0002577306,0.0007033921,0.002747529,0.00196274,0.0001188293],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967915,0.00149057,0.000319762,0.0009590503,0.00004215737,0.00007799252,0.00000661581,0.00002249996,0.0002898003],"genre_scores_gemma":[0.9991998,0.0001203566,0.000147813,0.0003501584,0.0001227855,0.000005969073,0.00002990918,6.809843e-7,0.00002249323],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7097637,"threshold_uncertainty_score":0.1941393,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008682523580052592,"score_gpt":0.2292082705680413,"score_spread":0.2205257469879887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}