{"id":"W2076378481","doi":"10.1007/s004380051206","title":"The bacteriophage D108 Ner repressor binds a conformationally distinct operator","year":2000,"lang":"en","type":"article","venue":"Molecular and General Genetics MGG","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"Medical Research Council","keywords":"Repressor; Biology; Operator (biology); DNA; Electrophoretic mobility shift assay; Direct repeat; Podoviridae; Inverted repeat; Bacteriophage; Molecular biology; Genetics; Biophysics; Stereochemistry; Transcription factor; Chemistry; Gene; Base sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007805492,0.0001331912,0.00008729338,0.000009720527,0.0003449231,0.0001938436,0.0001693462,0.00004946643,0.003260592],"category_scores_gemma":[0.000005768962,0.00009644187,0.00005811226,0.00007394444,0.0001462783,0.00008236286,0.0001060258,0.00009266321,0.0003188367],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002217988,"about_ca_system_score_gemma":0.000008914864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009503141,"about_ca_topic_score_gemma":0.00006701168,"domain_scores_codex":[0.9992008,0.00004112484,0.000194913,0.0002159914,0.0001195551,0.0002275799],"domain_scores_gemma":[0.9995868,0.00001097629,0.00003481063,0.0002548215,0.00001069524,0.0001018869],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002516666,0.00002977294,0.0004111337,0.000002596813,0.00002319782,0.00001414977,0.0001690657,0.0006780046,0.9337684,0.00006495723,0.00233809,0.06247545],"study_design_scores_gemma":[0.0004473733,0.0001025034,0.1779279,0.000007312565,0.00003380085,0.00009502864,0.00001709292,0.002366947,0.08764637,0.00009171569,0.7309282,0.0003357576],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9866418,0.0002668938,0.0001717988,0.0004576594,0.0001055839,0.0001420089,0.00002738969,0.00001614586,0.01217076],"genre_scores_gemma":[0.9837601,0.0002415808,0.0009006726,0.001023033,0.00005508085,0.00001539397,0.00003126219,0.00001552378,0.01395732],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.846122,"threshold_uncertainty_score":0.9976506,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003227953690534777,"score_gpt":0.2068651189745808,"score_spread":0.203637165284046,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}