{"id":"W2076472576","doi":"10.3791/50222","title":"The <em>Citrobacter rodentium</em> Mouse Model: Studying Pathogen and Host Contributions to Infectious Colitis","year":2013,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Children's Hospital","funders":"Canadian Institutes of Health Research; CH.I.L.D. Foundation; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Citrobacter rodentium; Microbiology; Biology; Pathogen; Colitis; Citrobacter; Immune system; Immunology; Diarrhea; Virulence; Enterobacteriaceae; Escherichia coli; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005782938,0.0002399697,0.0003435176,0.00008878421,0.0004798262,0.0003000468,0.0002976986,0.0001139751,0.00001740917],"category_scores_gemma":[0.0006132007,0.0001768446,0.000152457,0.0001295993,0.00009796083,0.00003340916,0.0004495406,0.0001838195,0.00001232204],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001120464,"about_ca_system_score_gemma":0.0001298938,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001925074,"about_ca_topic_score_gemma":0.00004818696,"domain_scores_codex":[0.9979666,0.0002487329,0.0005256428,0.0002631988,0.0004866839,0.0005091431],"domain_scores_gemma":[0.9981269,0.00005280996,0.0002696852,0.0002872838,0.0009443073,0.0003189885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002051228,0.0002087383,0.001011305,0.000007087949,0.0004012516,0.000004955256,0.0006667327,0.00003303836,0.9924363,0.00009013324,0.004677858,0.0002574814],"study_design_scores_gemma":[0.01106195,0.003568442,0.02494217,0.0001376089,0.0001913379,0.0001431942,0.003262528,0.001649012,0.9092321,0.0003164405,0.04442022,0.001074975],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941396,0.002727843,0.001880807,0.0002328241,0.0001797169,0.0006145942,0.00005039633,0.00001133629,0.0001629026],"genre_scores_gemma":[0.9960861,0.001545945,0.0007032134,0.0003323208,0.0002439702,0.0001603581,0.000007653745,0.00003558887,0.000884859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08320417,"threshold_uncertainty_score":0.7211515,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01671806000617222,"score_gpt":0.3664501066268,"score_spread":0.3497320466206278,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}