{"id":"W2077120454","doi":"10.1016/j.vetimm.2011.04.010","title":"Global gene expression analysis of chicken caecal response to Campylobacter jejuni","year":2011,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Saskatchewan","funders":"Food Institutional Research Measure","keywords":"Biology; Campylobacter jejuni; Gene expression; Fold change; Microbiology; Campylobacter; Microarray; Gene expression profiling; Lamina propria; Gene; Microarray analysis techniques; Mucin 2; Molecular biology; Cecum; Genetics; Bacteria; Epithelium","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001135461,0.0002925196,0.0003445977,0.0004781598,0.0003199702,0.0003784228,0.0001336333,0.0002774587,0.000918117],"category_scores_gemma":[0.0001236515,0.0001776682,0.000247526,0.0003420483,0.0003778948,0.0001574348,0.0001849095,0.0003988177,0.0001642916],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005176634,"about_ca_system_score_gemma":0.0002578306,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005256709,"about_ca_topic_score_gemma":0.00847562,"domain_scores_codex":[0.999885,0.000009671674,0.000004615124,0.0000471619,0.00001893316,0.00003458578],"domain_scores_gemma":[0.9998907,0.00002308806,0.00001325435,0.000007626083,0.00003468313,0.00003072547],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004665547,0.00001348213,0.001543392,0.00002580372,0.000006130979,0.00001782512,0.00003808676,0.00003838618,0.9972621,0.00002300316,0.0000309688,0.0005343026],"study_design_scores_gemma":[0.00005464904,0.001024804,0.4332795,0.00001415685,0.00009831369,0.0002042205,0.0006615095,0.002046668,0.5603996,0.00008369716,0.002111805,0.00002108627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974606,0.0004796708,0.0004245512,0.00004143063,0.00001552378,0.00001383426,0.0008339079,0.00001251558,0.0007178606],"genre_scores_gemma":[0.9929564,0.0003230333,0.0009836907,0.00007745757,0.0000139481,0.00005613622,0.001731234,0.00001398664,0.003844017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005256709,"threshold_uncertainty_score":0.01045221,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03805065888980937,"score_gpt":0.2570673465265147,"score_spread":0.2190166876367053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}