{"id":"W2077543426","doi":"10.1186/1471-2180-9-40","title":"MyBASE: a database for genome polymorphism and gene function studies of Mycobacterium","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Beijing Municipal Science and Technology Commission; National Natural Science Foundation of China","keywords":"Biology; Genome; dbSNP; Genetics; Genomics; Virulence; Gene; Computational biology; Genome browser; Whole genome sequencing; Comparative genomics; Database; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002282913,0.0001320985,0.0003906967,0.0001355181,0.00004985135,0.000004821505,0.00005192048,0.0000884378,0.00007956099],"category_scores_gemma":[0.0002992298,0.0001053837,0.00007363216,0.00008396126,0.0001379803,0.00004680313,0.00005126886,0.00007175861,0.00001076656],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000300649,"about_ca_system_score_gemma":0.00008483436,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001350919,"about_ca_topic_score_gemma":0.00001290788,"domain_scores_codex":[0.9990876,0.00005149456,0.0002462703,0.0002829984,0.00003494124,0.0002966408],"domain_scores_gemma":[0.9992025,0.0002010154,0.00007952402,0.0002514705,0.0001578833,0.000107583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00142593,0.000113724,0.005567487,0.000261263,0.0000900004,0.000005912893,0.00005332947,1.121694e-7,0.9890903,0.0001194733,0.002706883,0.0005656006],"study_design_scores_gemma":[0.01059176,0.01034445,0.4121748,0.0002288111,0.0006626605,0.0008316694,0.0003040263,0.00001686596,0.5094892,0.000404581,0.05443331,0.000517819],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988512,0.008674615,0.0008677933,0.000660431,0.0001386856,0.0005577552,0.0005246024,0.0000252728,0.00003881616],"genre_scores_gemma":[0.9903347,0.001468893,0.005471792,0.001086532,0.0002860183,0.0000519218,0.0009655794,0.00001287802,0.0003216806],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4796011,"threshold_uncertainty_score":0.4297422,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0547289215230419,"score_gpt":0.3290250862882897,"score_spread":0.2742961647652478,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}