{"id":"W2077910486","doi":"10.1093/molbev/msm091","title":"Phylogeny of Primary Photosynthetic Eukaryotes as Deduced from Slowly Evolving Nuclear Genes","year":2007,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Phylogenetics; Nuclear gene; Evolutionary biology; Gene; Primary (astronomy); Genome; Computational biology; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003332568,0.0003917048,0.0003308179,0.00128471,0.0004687397,0.0006758796,0.0002309489,0.0002314385,0.0006789041],"category_scores_gemma":[0.0006914216,0.0001602525,0.0003699157,0.001588695,0.0002821158,0.0003790068,0.0003530202,0.0003900749,0.0004718623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003064028,"about_ca_system_score_gemma":0.000368137,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007976283,"about_ca_topic_score_gemma":0.001516515,"domain_scores_codex":[0.9998391,0.00002416525,0.00001620321,0.00005987673,0.00003495081,0.00002575566],"domain_scores_gemma":[0.9995416,0.000114542,0.0001407107,0.00004203327,0.00008779857,0.00007329978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009753334,0.00006365239,0.1660327,0.0006014713,0.0001280655,0.000691787,0.001701613,0.001510454,0.7863014,0.0009542647,0.0003174592,0.04072197],"study_design_scores_gemma":[0.00005005613,0.0004600608,0.9090165,0.0002866831,0.0004969282,0.002286423,0.001737947,0.0186504,0.04463818,0.001945174,0.02035567,0.00007591864],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988876,0.001596292,0.006594562,0.00002953546,0.00001513546,0.00002747112,0.001315953,0.00004116963,0.00150378],"genre_scores_gemma":[0.9761705,0.001850123,0.01482514,0.00004208374,0.00001649085,0.00004376167,0.006400432,0.00003843226,0.0006130267],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00128471,"threshold_uncertainty_score":0.002271116,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005155245262308294,"score_gpt":0.2240284250076358,"score_spread":0.2188731797453276,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}