{"id":"W2078554713","doi":"10.1371/journal.pntd.0002569","title":"De Novo Assembly of a Field Isolate Genome Reveals Novel Plasmodium vivax Erythrocyte Invasion Genes","year":2013,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Malaria Research and Control","field":"Medicine","cited_by":117,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; McGill University","keywords":"Biology; Plasmodium vivax; Genetics; Genome; Gene; Contig; Locus (genetics); Sequence assembly; Plasmodium falciparum; Transcriptome; Gene expression; Malaria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000006034775,0.0002264597,0.0005395527,0.00016347,0.00008360795,0.00005655973,0.0002188759,0.0001593986,0.001575313],"category_scores_gemma":[0.001372908,0.0001802615,0.0002102277,0.0002887771,0.00008023487,0.0001451388,0.0001064187,0.0002746067,0.000107957],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000796999,"about_ca_system_score_gemma":0.0003157718,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001363448,"about_ca_topic_score_gemma":0.00001153738,"domain_scores_codex":[0.9980006,0.00009360262,0.0004123126,0.0003660985,0.000508218,0.0006192223],"domain_scores_gemma":[0.9980175,0.0003924241,0.00009748594,0.0004280615,0.000354572,0.0007099189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001302063,0.001124327,0.006132179,0.0003264115,0.0002567582,0.00005493034,0.00002423238,0.000004539239,0.9889038,0.0004110438,0.000518173,0.0009415455],"study_design_scores_gemma":[0.003542518,0.001316066,0.9580646,0.0002140651,0.0003111127,0.00003056488,0.00002024489,0.00234588,0.03334812,0.0004002279,0.0002006766,0.0002059086],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9901555,0.001008657,0.00290888,0.004241161,0.00003388813,0.0009937029,0.00006549024,0.0001174283,0.0004752766],"genre_scores_gemma":[0.9966787,0.0002148491,0.0009782718,0.001210333,0.0002386304,0.0002073554,0.00003916513,0.00003317393,0.0003995745],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9555557,"threshold_uncertainty_score":0.9993374,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01891942418395968,"score_gpt":0.25292320695197,"score_spread":0.2340037827680103,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}