{"id":"W2078608034","doi":"10.3732/ajb.1100570","title":"Ultra‐barcoding in cacao (<i>Theobroma</i> spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA","year":2012,"lang":"en","type":"article","venue":"American Journal of Botany","topic":"Cocoa and Sweet Potato Agronomy","field":"Agricultural and Biological Sciences","cited_by":281,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Theobroma; DNA barcoding; Genome; Ribosomal DNA; Plastid; Ribosomal RNA; Chloroplast DNA; Subspecies; Evolutionary biology; Genetics; DNA sequencing; Nuclear gene; Phylogenetics; Botany; Gene; Chloroplast; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003130811,0.0003606201,0.0002988253,0.001159903,0.0004274896,0.0006526927,0.0005331107,0.0005648895,0.0007109451],"category_scores_gemma":[0.0007142686,0.0001644482,0.0003034594,0.00093112,0.0003669698,0.0004791309,0.0004384562,0.0002883724,0.0002925029],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007571937,"about_ca_system_score_gemma":0.0004049854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00879741,"about_ca_topic_score_gemma":0.01354477,"domain_scores_codex":[0.9997047,0.00001609372,0.00001675665,0.0001847305,0.00004913789,0.00002856362],"domain_scores_gemma":[0.999392,0.0001200371,0.0002628355,0.00005746209,0.0001082259,0.00005944943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001634695,0.0000304478,0.02687703,0.0003348522,0.00005377547,0.0001596258,0.0005468708,0.0004674316,0.9386494,0.000369954,0.0001742226,0.03217286],"study_design_scores_gemma":[0.00002083443,0.0004983417,0.8136312,0.0001785412,0.0003025879,0.001203227,0.001006368,0.005917336,0.1559459,0.00115424,0.02005265,0.00008863761],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9829616,0.001460815,0.0112641,0.000123929,0.0000408506,0.00005474469,0.002287942,0.0002659463,0.001540083],"genre_scores_gemma":[0.9614031,0.0006468413,0.03089799,0.0001990708,0.00002909506,0.00007875237,0.005048537,0.00007701138,0.001619679],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00879741,"threshold_uncertainty_score":0.01749241,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01268696596335599,"score_gpt":0.2116613234199363,"score_spread":0.1989743574565803,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}