{"id":"W2078641190","doi":"10.1101/gr.146654.112","title":"CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo","year":2013,"lang":"en","type":"article","venue":"Genome Research","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Cancer Institute; National Institutes of Health","keywords":"Biology; Computational biology; DNA microarray; Sequence motif; DNA; DNA methylation; Genetics; Molecular biology; Transcription factor; Consensus sequence; Gene; Peptide sequence; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000247726,0.0004781587,0.0004782793,0.0003472528,0.0002958922,0.0003164924,0.0003816774,0.0005624469,0.003126933],"category_scores_gemma":[0.000311835,0.0003644933,0.0003293991,0.0003087122,0.0002351334,0.0002502073,0.0002738765,0.0007362899,0.0008229438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004727194,"about_ca_system_score_gemma":0.0001774955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008861928,"about_ca_topic_score_gemma":0.002111056,"domain_scores_codex":[0.9996456,0.0000381134,0.0000134643,0.0001363932,0.0001016074,0.0000648327],"domain_scores_gemma":[0.999819,0.00004533659,0.00004416621,0.00002158712,0.00002637297,0.00004352076],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003625394,0.000004367427,0.0001049705,0.00001011755,0.000003255777,0.000007131653,0.000004536043,0.00001779367,0.9993603,0.00001865368,0.00002025987,0.0004125552],"study_design_scores_gemma":[0.000006905374,0.00007796929,0.006503752,0.000002769711,0.00001087674,0.00008909622,0.00001774598,0.0007273621,0.9906528,0.00006439423,0.001841604,0.000004803079],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9512708,0.001422118,0.04192766,0.0002214007,0.00006847812,0.00004786456,0.002138835,0.0004899218,0.002413076],"genre_scores_gemma":[0.951609,0.000631719,0.03722145,0.0002597449,0.00002625921,0.0001455805,0.003567747,0.0001743988,0.006364289],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003126933,"threshold_uncertainty_score":0.01046062,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0941950773722481,"score_gpt":0.379413149729504,"score_spread":0.2852180723572559,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}