{"id":"W2078694837","doi":"10.1016/j.ympev.2006.01.011","title":"Sequences from 14 mitochondrial genes provide a well-supported phylogeny of the Charadriiform birds congruent with the nuclear RAG-1 tree","year":2006,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Mitochondrial DNA; Nuclear gene; Phylogenetics; Cytochrome b; Nuclear DNA; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003849546,0.0004972007,0.000821387,0.001158918,0.0009360928,0.0007600294,0.0004120666,0.0004463603,0.004524468],"category_scores_gemma":[0.0008132139,0.0002254626,0.0003954087,0.001267616,0.0004219888,0.0004327272,0.0003780851,0.0006927929,0.002362273],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003898924,"about_ca_system_score_gemma":0.0006080739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001472095,"about_ca_topic_score_gemma":0.004880806,"domain_scores_codex":[0.9997879,0.00002197134,0.00001903671,0.00008006123,0.00004104224,0.00005002765],"domain_scores_gemma":[0.9986283,0.000344165,0.0003506659,0.0001099525,0.0002733378,0.0002935753],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001784861,0.0001685967,0.08582209,0.0007389005,0.0003492363,0.000800665,0.001449858,0.001888914,0.8291761,0.001349177,0.0005735135,0.07589814],"study_design_scores_gemma":[0.0001347546,0.001043295,0.8824736,0.0003305829,0.0007931422,0.00323665,0.001487945,0.004732741,0.06422538,0.003246364,0.03815199,0.0001435181],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9804035,0.002622942,0.008543739,0.0001693474,0.00006113736,0.00004285864,0.003297642,0.0002134248,0.004645474],"genre_scores_gemma":[0.9761245,0.0010254,0.01157827,0.0001277381,0.00005050162,0.00004630168,0.008533213,0.00005714114,0.002456948],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004524468,"threshold_uncertainty_score":0.01513588,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003829396669408371,"score_gpt":0.1781265245547431,"score_spread":0.1742971278853348,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}