{"id":"W2078725021","doi":"10.1074/jbc.m113.533158","title":"Catalytic Mechanism and Mode of Action of the Periplasmic Alginate Epimerase AlgG","year":2014,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Alberta Glycomics Centre; University of Alberta; Hospital for Sick Children","funders":"National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Periplasmic space; Chemistry; Hydrolase; Biofilm; Azotobacter vinelandii; Biochemistry; Enzyme; Stereochemistry; Bacteria; Biology; Gene; Organic chemistry; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001006835,0.00005588651,0.0001268526,0.000004645037,0.00003034883,0.000004205847,0.0001214042,0.00006259062,0.0002827379],"category_scores_gemma":[0.00005639321,0.0000313637,0.00007665341,0.00003603962,0.0001454947,0.00005008398,0.00007531577,0.0001333112,0.000001958508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002861286,"about_ca_system_score_gemma":0.000004594498,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000032889,"about_ca_topic_score_gemma":0.000001448658,"domain_scores_codex":[0.9995814,0.00002027659,0.000204738,0.00006715017,0.00005950351,0.00006692074],"domain_scores_gemma":[0.9995558,0.00003342148,0.0002806103,0.00007921085,0.00001244694,0.00003848122],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000198099,0.00003605362,0.0004047025,0.000009811046,0.000007511975,4.538608e-7,0.00002747862,0.00002573917,0.9980464,0.000006888129,0.00004349666,0.001371685],"study_design_scores_gemma":[0.0001290255,0.00005992288,0.01192546,0.00002051529,0.00001456025,0.0001141184,0.00003467971,0.000168171,0.9865814,0.0004477319,0.0004683147,0.00003604944],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989116,0.00001411388,0.0002096179,0.000145927,0.00005940294,0.00002022079,0.000005680529,0.000001474323,0.0006319747],"genre_scores_gemma":[0.9995747,0.00003808768,0.0002055072,0.00003209853,0.00002406917,3.205599e-7,6.336801e-7,0.000002064193,0.000122471],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01152075,"threshold_uncertainty_score":0.3095782,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01270161832159934,"score_gpt":0.2416779327055264,"score_spread":0.228976314383927,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}