{"id":"W2078924512","doi":"10.1128/aem.03793-13","title":"Intestinal Microbiota and Species Diversity of <i>Campylobacter</i> and <i>Helicobacter</i> spp. in Migrating Shorebirds in Delaware Bay","year":2014,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":70,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"U.S. Fish and Wildlife Service; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Office of Research and Development; U.S. Environmental Protection Agency","keywords":"Biology; Campylobacter; Arcobacter; Fusobacteria; Calidris; Bacteroidetes; Helicobacter; Microbiology; 16S ribosomal RNA; Proteobacteria; Campylobacter coli; Campylobacter jejuni; Ecology; Bacteria; Genetics; Helicobacter pylori","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001138278,0.000217007,0.0002003301,0.0008269839,0.0004900549,0.0004608303,0.0001813937,0.0002105002,0.0006155734],"category_scores_gemma":[0.0001382094,0.0002646872,0.0001893706,0.0003569996,0.0003782131,0.0002375868,0.000340698,0.000206673,0.0001462326],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007191144,"about_ca_system_score_gemma":0.0003355467,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06392098,"about_ca_topic_score_gemma":0.1430534,"domain_scores_codex":[0.999881,0.000008746649,0.000008482581,0.0000507784,0.00002176209,0.00002913473],"domain_scores_gemma":[0.9997491,0.00001691916,0.0001004826,0.000007349907,0.00004409133,0.00008205191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001881444,0.00004444142,0.9484401,0.00003312217,0.00005034293,0.0001927806,0.0008534653,0.00006342755,0.04647913,0.000008855161,0.00007831823,0.003567789],"study_design_scores_gemma":[0.0000014261,0.00004320809,0.9989597,0.000003445879,0.000008145797,0.00006013782,0.000488662,0.00003188114,0.0003142273,0.000001605951,0.0000858058,0.000001827084],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997544,0.0000422093,0.00001191005,0.000004719112,4.918205e-7,0.000001665363,0.00007108546,0.000001247471,0.0001123786],"genre_scores_gemma":[0.9993581,0.00007213705,0.0001072088,0.00002372438,0.000001515894,0.000005311274,0.0002364708,0.000001067267,0.0001944195],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06392098,"threshold_uncertainty_score":0.1270978,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007947335314384246,"score_gpt":0.1618429192423728,"score_spread":0.1538955839279886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}