{"id":"W2079099472","doi":"10.1529/biophysj.105.076075","title":"A Protein Dynamics Study of Photosystem II: The Effects of Protein Conformation on Reaction Center Function","year":2006,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":false,"ca_institutions":"Brock University","funders":"","keywords":"Chromophore; Photosynthetic reaction centre; P700; Photosystem II; Chemistry; Electron transport chain; Purple bacteria; Excited state; Molecular dynamics; Photosystem I; Electron transfer; Quantum yield; Photosystem; Chemical physics; Photochemistry; Photosynthesis; Atomic physics; Computational chemistry; Fluorescence; Physics; Optics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001222087,0.00009817145,0.0001253835,0.00002977742,0.00009984311,0.000009123018,0.000102574,0.00006133797,9.460298e-7],"category_scores_gemma":[0.00002601182,0.00006306189,0.00007745284,0.00006526095,0.00002386896,0.000007299041,0.00003211067,0.0001071704,0.000001009694],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002058034,"about_ca_system_score_gemma":0.00002731201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003271543,"about_ca_topic_score_gemma":0.00001198262,"domain_scores_codex":[0.9992535,0.00006552399,0.0002552099,0.0001044018,0.0002144889,0.0001068996],"domain_scores_gemma":[0.9993833,0.000006290303,0.0003172932,0.0001516697,0.0001153489,0.00002604568],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003451539,0.0009053072,0.000008118028,0.00007684698,0.00003329019,7.935047e-7,0.00003759186,0.000005195135,0.9972904,0.0004666554,0.000009801151,0.000820787],"study_design_scores_gemma":[0.000915304,0.00450313,0.0002743262,0.0001100042,0.00002651074,0.00001381688,0.0001925423,0.0002758024,0.9932798,0.0001513892,0.0001916335,0.00006581314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974678,0.000007025199,0.001461065,0.00002308792,0.0001219891,0.0007299642,0.000005803358,0.000004058344,0.0001792238],"genre_scores_gemma":[0.9996564,0.000003151372,0.00001137433,0.00001221121,0.0001666952,0.00004563971,0.00001281439,0.000008675016,0.0000830141],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004010732,"threshold_uncertainty_score":0.2571589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003471704536301475,"score_gpt":0.2022782934629158,"score_spread":0.1988065889266144,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}