{"id":"W2079401329","doi":"10.1128/jvi.02658-09","title":"Whole-Genome Characterization and Genotyping of Global WU Polyomavirus Strains","year":2010,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Biology; Genotyping; Genome; Genetics; Clade; Whole genome sequencing; Typing; Computational biology; Evolutionary biology; Genotype; Phylogenetic tree; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001306147,0.00008158895,0.0002877323,0.00007567198,0.00003162213,0.00000574342,0.00005935179,0.0001645197,0.00007904268],"category_scores_gemma":[0.00006644067,0.00006187501,0.00007960548,0.00007943909,0.0001390494,0.00007504584,0.00002166416,0.0002670244,0.000004415316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001568845,"about_ca_system_score_gemma":0.0001260726,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008088591,"about_ca_topic_score_gemma":0.000005163898,"domain_scores_codex":[0.9992769,0.00002658106,0.0003617207,0.0000786594,0.0001155224,0.0001406257],"domain_scores_gemma":[0.9992965,0.00001454954,0.0003410875,0.00009433195,0.00008531825,0.0001681783],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002835609,0.0001283018,0.02177809,0.00001931066,0.0001007358,0.00008808091,0.00005736386,0.000001741934,0.9717019,0.0003392329,0.000007651534,0.00549406],"study_design_scores_gemma":[0.001355708,0.0005908892,0.9908422,0.00002428757,0.0002139085,0.001409034,0.00001889784,0.00004351752,0.00144797,0.0001531276,0.003844823,0.00005559729],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971661,0.0007853215,0.0002955416,0.00109919,0.0003219988,0.00005906598,0.00006023486,0.000005632831,0.000206933],"genre_scores_gemma":[0.9988673,0.0001698863,0.000225918,0.0003774005,0.0002986352,3.143861e-7,0.000009013685,0.000007362891,0.00004422084],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9702539,"threshold_uncertainty_score":0.2523189,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00876922388278527,"score_gpt":0.2690444615648202,"score_spread":0.2602752376820349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}