{"id":"W2079514373","doi":"10.1139/w06-099","title":"Phylogenetic relationships of<i>Campylobacter jejuni</i>based on<i>porA</i>sequences","year":2007,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Health Canada; Wellcome Trust","keywords":"Biology; Campylobacter jejuni; Phylogenetic tree; Genetics; Multilocus sequence typing; Campylobacter; Subtyping; Virulence; Gene; Microbiology; Serotype; Bacterial outer membrane; GenBank; Phylogenetics; Bacteria; Escherichia coli; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000272374,0.0002742702,0.0002604674,0.001466026,0.0005547199,0.0005391845,0.0002386095,0.0003629939,0.001425782],"category_scores_gemma":[0.0008398119,0.0001598429,0.0002277736,0.0007384039,0.0003005536,0.0002044976,0.000368577,0.0003666362,0.0004904871],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006527742,"about_ca_system_score_gemma":0.0005041891,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01112745,"about_ca_topic_score_gemma":0.008777934,"domain_scores_codex":[0.9997237,0.00003592472,0.00002218871,0.00006263309,0.00005074007,0.0001047326],"domain_scores_gemma":[0.9993883,0.0001098283,0.0001141487,0.00002468117,0.0001743747,0.0001886337],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001743483,0.0003454995,0.6838644,0.000221076,0.0001241079,0.001670702,0.003126337,0.001538408,0.2575962,0.0007989614,0.001100369,0.0478705],"study_design_scores_gemma":[0.00002529307,0.0002825113,0.9831155,0.00007791573,0.00005590788,0.001804144,0.001456632,0.0019723,0.005705561,0.0002909593,0.005187098,0.00002610012],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975134,0.0003979919,0.0003107658,0.00006109748,0.000005227004,0.00002524876,0.0002028958,0.000009361546,0.001473931],"genre_scores_gemma":[0.9968228,0.0002366818,0.001263405,0.00006021194,0.000005364825,0.0000134248,0.001066441,0.000007437924,0.0005242984],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01112745,"threshold_uncertainty_score":0.02212536,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03143528651214911,"score_gpt":0.2188682028204525,"score_spread":0.1874329163083034,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}