{"id":"W2079587196","doi":"10.1016/j.virol.2009.03.011","title":"P087, a lactococcal phage with a morphogenesis module similar to an Enterococcus faecalis prophage","year":2009,"lang":"en","type":"article","venue":"Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":37,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval","funders":"","keywords":"Prophage; Biology; Siphoviridae; ORFS; Lactococcus lactis; Genome; Enterococcus faecalis; Bacteriophage; Microbiology; Genetics; Plasmid; Virulence; Gene; Bacteria; Open reading frame; Escherichia coli; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007471088,0.000208294,0.0002217392,0.00005781362,0.0001342101,0.00004030596,0.0002806539,0.0001043187,0.004077274],"category_scores_gemma":[0.000007841462,0.000167967,0.00005724832,0.0001975187,0.00009935327,0.0002853225,0.00009237963,0.0001465021,0.001002237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008994639,"about_ca_system_score_gemma":0.000007569051,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003187034,"about_ca_topic_score_gemma":0.000590738,"domain_scores_codex":[0.998702,0.00007532079,0.0001854627,0.0004956989,0.0001048016,0.00043664],"domain_scores_gemma":[0.9993077,0.00001256969,0.00005526461,0.0003768402,0.000008477338,0.000239149],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002051438,0.0003304842,0.0005053941,0.000001474223,0.00001079754,0.0001480684,0.0002622314,0.0004310154,0.9885549,0.00001273747,0.001273695,0.008264078],"study_design_scores_gemma":[0.001314179,0.004717321,0.821919,0.00001195825,0.00006870308,0.000497981,0.00006950748,0.0007218589,0.08850788,0.0001100796,0.08143227,0.0006292855],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940377,0.00000822954,0.002182529,0.00134004,0.00008039015,0.0004821285,0.00003867632,0.00008471503,0.001745517],"genre_scores_gemma":[0.9915718,0.000003054092,0.00237807,0.005079057,0.00006629388,0.0000606979,0.00001622177,0.00002022818,0.0008045879],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.900047,"threshold_uncertainty_score":0.9997756,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006626866800812183,"score_gpt":0.2357057622879691,"score_spread":0.229078895487157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}