{"id":"W2079598084","doi":"10.1016/j.mimet.2007.09.015","title":"Differentiation of genes extracted from non-viable versus viable micro-organisms in environmental samples using ethidium monoazide bromide","year":2007,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":70,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Saskatchewan","funders":"Australian Antarctic Division; Syncrude","keywords":"Ethidium bromide; Biology; Temperature gradient gel electrophoresis; 16S ribosomal RNA; Microorganism; Environmental DNA; Microbiology; Polymerase chain reaction; DNA; Soil microbiology; Biofilm; Bacteria; Gene; Biochemistry; Ecology; Genetics; Biodiversity","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0022444,0.0002155695,0.0006023944,0.0001027066,0.0001199881,0.000009992596,0.0004897927,0.0004347123,0.003597496],"category_scores_gemma":[0.0002087654,0.0001749605,0.0001662449,0.0001782306,0.0003660585,0.0001543926,0.0003276914,0.0006888373,0.00002123854],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002886754,"about_ca_system_score_gemma":0.0000216775,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005744218,"about_ca_topic_score_gemma":0.0002144617,"domain_scores_codex":[0.9972724,0.001112779,0.0009145946,0.0002338386,0.00008159287,0.0003847403],"domain_scores_gemma":[0.9972531,0.001706532,0.0007124041,0.0002213811,0.00001455521,0.00009201978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007675601,0.0003325115,0.03965488,0.00000384843,0.00004907315,0.000008176853,0.0002057893,0.0007760955,0.9558872,0.000002369436,0.0000609413,0.002251547],"study_design_scores_gemma":[0.001120127,0.000359254,0.2358081,0.00001961121,0.00004866205,0.00002916366,0.0001862215,0.00007322708,0.7602421,0.0008112753,0.001133435,0.000168788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9681583,0.0002562445,0.03085974,0.00002612162,0.0004611645,0.0001287535,0.00002964425,0.000005360384,0.00007466535],"genre_scores_gemma":[0.7080331,0.0001352325,0.2916484,0.00008160981,0.00005138071,4.481858e-7,0.00002711366,0.000009780053,0.00001296981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2607886,"threshold_uncertainty_score":0.9973134,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05101505962530507,"score_gpt":0.3303519709143494,"score_spread":0.2793369112890443,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}