{"id":"W2079686515","doi":"10.1371/journal.pone.0004889","title":"Enterohemorrhagic Escherichia coli O157∶H7 Gene Expression Profiling in Response to Growth in the Presence of Host Epithelia","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; University of Toronto","keywords":"Escherichia coli; Gene expression profiling; Gene expression; Biology; Microbiology; Gene; Host (biology); Host response; Genetics; Immune system","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000865641,0.0001443905,0.0002185535,0.00009131071,0.00004414967,0.00001580733,0.0004348284,0.00008550799,0.000004714579],"category_scores_gemma":[0.001595989,0.0001119464,0.00003819181,0.0003634667,0.00006000459,0.000006759557,0.0001943853,0.0001908712,0.000005063579],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002320087,"about_ca_system_score_gemma":0.00006901614,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002983028,"about_ca_topic_score_gemma":0.00002839447,"domain_scores_codex":[0.998262,0.000447711,0.0002656821,0.000332248,0.0003580357,0.0003343235],"domain_scores_gemma":[0.9992718,0.0001013164,0.00006418644,0.0003812493,0.0001220816,0.00005941773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001402913,0.0009052314,0.02012735,0.00004390557,0.00001662007,0.00001203799,0.0004588652,0.000007794486,0.9769114,0.00001217666,0.00006173536,0.00003995748],"study_design_scores_gemma":[0.0004882216,0.0006570757,0.09528101,0.000142944,0.000006119716,6.13694e-7,0.0001834375,0.0000750444,0.9029835,0.00004566882,0.00002532688,0.0001109958],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971511,0.0005488807,0.00005781127,0.001264047,0.00001160977,0.0007127759,0.00001252463,0.000006751038,0.0002344658],"genre_scores_gemma":[0.9896575,0.0002150049,0.009419993,0.0003634054,0.00005438035,0.0001273302,0.000007905137,0.00001189076,0.000142605],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07515366,"threshold_uncertainty_score":0.4565043,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02616837521363306,"score_gpt":0.2681477758623149,"score_spread":0.2419794006486819,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}