{"id":"W2079809719","doi":"10.1261/rna.7300804","title":"Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in <i>Euglena gracilis</i>","year":2004,"lang":"en","type":"article","venue":"RNA","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Canada Research Chairs; Nova Scotia Health Research Foundation","keywords":"Pseudouridine; Biology; Euglena gracilis; Euglena; Small nucleolar RNA; Computational biology; RNA; Genetics; Long non-coding RNA; Transfer RNA; Gene; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001455141,0.0001200055,0.0001184545,0.00002799406,0.00006341001,0.00001836801,0.0001374014,0.0001498836,0.00001725911],"category_scores_gemma":[0.00006208318,0.0001234985,0.00005033763,0.00008362618,0.00006043119,0.000004031265,0.00009691335,0.00009525862,0.00002270057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000286057,"about_ca_system_score_gemma":0.00005356739,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003876667,"about_ca_topic_score_gemma":0.0003862239,"domain_scores_codex":[0.999281,0.00003361078,0.0001271323,0.0002465744,0.00008816521,0.0002234645],"domain_scores_gemma":[0.999675,0.000005923081,0.00004921229,0.0001696694,0.00002787679,0.00007235876],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002063519,0.0003858905,0.0841112,0.00004575754,0.0001583111,0.00009934839,0.0004010955,0.000203903,0.8949729,0.00153809,0.01369815,0.004179041],"study_design_scores_gemma":[0.003722296,0.0003726597,0.06602696,0.00007673067,0.00003708681,0.00004480218,0.00007777607,0.00001145099,0.7733815,0.002341553,0.1532998,0.000607468],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906387,0.0009263902,0.000130672,0.0004530056,0.00008780367,0.0001426687,0.0000599261,0.00001486614,0.007545986],"genre_scores_gemma":[0.9971681,0.0002074482,0.0001679878,0.001252051,0.00008557741,0.000005260913,0.00003166056,0.00001277863,0.001069089],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1396016,"threshold_uncertainty_score":0.5036123,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009598156288109465,"score_gpt":0.2286291753659777,"score_spread":0.2190310190778682,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}