{"id":"W2080041412","doi":"10.1038/srep00227","title":"A Gene Signature for Predicting Outcome in Patients with Basal-like Breast Cancer","year":2012,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Nonmelanoma Skin Cancer Studies","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"ca_institutions":"Juravinski Cancer Centre; McMaster University; McMaster University Medical Centre","funders":"Stem Cell Network; Ontario Institute for Cancer Research","keywords":"Breast cancer; Basal (medicine); Oncology; Medicine; Internal medicine; Disease; Cancer; Gene signature; Bioinformatics; Gene; Biology; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007806809,0.0001769347,0.0003296908,0.0001641927,0.0001720805,0.00003971429,0.00005403173,0.00007440549,0.0001031746],"category_scores_gemma":[0.00007941572,0.000126863,0.00006963901,0.0004248655,0.0001443333,0.0002119302,0.00006296923,0.0001555861,0.000003468858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002522275,"about_ca_system_score_gemma":0.0001528591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007168125,"about_ca_topic_score_gemma":0.0001035189,"domain_scores_codex":[0.997857,0.00001429825,0.0004464875,0.0005541574,0.0005787995,0.0005492663],"domain_scores_gemma":[0.9987335,0.0000315246,0.0002642955,0.0005322862,0.0002694486,0.0001689323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001376521,0.0001804086,0.9900727,0.00008872897,0.00005003365,0.00003668162,0.0003986274,0.00001111146,0.000208849,9.401539e-7,0.007433644,0.001380569],"study_design_scores_gemma":[0.001055888,0.00005275294,0.9925781,0.0001411414,0.0000759621,0.0000688537,0.00005735301,0.000009320836,0.00101466,0.00002956179,0.004764687,0.0001517454],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902057,0.0007191355,0.00004558121,0.0003132724,0.007179147,0.001103652,0.00004924268,0.00003838024,0.0003458569],"genre_scores_gemma":[0.9959608,0.000001665709,0.0009868107,0.0001514894,0.0002928728,0.0002213179,0.00007656821,0.00003338895,0.002275132],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006886274,"threshold_uncertainty_score":0.5173325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01500149594489543,"score_gpt":0.2757377831199413,"score_spread":0.2607362871750459,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}