{"id":"W2080569293","doi":"10.1186/1471-2105-10-442","title":"G+C content dominates intrinsic nucleosome occupancy","year":2009,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":281,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Genome Canada; Ontario Genomics; Ontario Genomics Institute; Canadian Institute for Advanced Research; Howard Hughes Medical Institute","keywords":"Nucleosome; Chromatin; Linker DNA; Biology; DNA; Genome; Genetics; Histone; DNA sequencing; GC-content; Computational biology; DNA microarray; Sequence (biology); Biophysics; Biological system; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004121366,0.0005599673,0.0006499701,0.0003622657,0.0003134063,0.0005760204,0.0004866947,0.0005784803,0.001573361],"category_scores_gemma":[0.001755878,0.0002994821,0.00055121,0.0004722997,0.0003724255,0.0004675366,0.0002999316,0.000328176,0.0005106073],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007631773,"about_ca_system_score_gemma":0.0005893096,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007061298,"about_ca_topic_score_gemma":0.007089188,"domain_scores_codex":[0.9997033,0.00004639515,0.00001300222,0.0001423652,0.00005555978,0.00003934949],"domain_scores_gemma":[0.9991539,0.0004190983,0.0001881275,0.00008586883,0.00008283306,0.0000703753],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001120612,0.0001068775,0.2729589,0.001378976,0.0005699426,0.0005848785,0.0002189071,0.2689188,0.4052002,0.00651293,0.002324195,0.0401048],"study_design_scores_gemma":[0.00005804139,0.0002431928,0.1405708,0.00005633795,0.0003838663,0.0007511957,0.00008693879,0.7782287,0.06348582,0.01286197,0.003187521,0.00008564597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.950204,0.0008694571,0.04468101,0.0001475361,0.00002968322,0.00002250299,0.001101337,0.0008256837,0.002118718],"genre_scores_gemma":[0.9943586,0.0002037203,0.004322486,0.00006040396,0.00001058178,0.000009816248,0.0007050136,0.00007505711,0.0002543992],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007061298,"threshold_uncertainty_score":0.01404041,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01536453061776141,"score_gpt":0.225525571516338,"score_spread":0.2101610408985766,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}