{"id":"W2080718254","doi":"10.1038/srep00955","title":"Plastid-localized amino acid biosynthetic pathways of Plantae are predominantly composed of non-cyanobacterial enzymes","year":2012,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; University of New Brunswick","funders":"New Brunswick Innovation Foundation; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Plastid; Biology; Enzyme; Phylogenetic tree; Cyanobacteria; Chloroplast; Genome; Amino acid; Biochemistry; Phylogenetics; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007169095,0.0001996618,0.0003662092,0.00009188058,0.00009840366,0.00002575857,0.0002182547,0.0001584792,0.00006360342],"category_scores_gemma":[0.0001771908,0.0001706879,0.0001561114,0.0001502047,0.0003177997,0.00001189984,0.0001668363,0.00005174197,0.000004013192],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009472693,"about_ca_system_score_gemma":0.0001575341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001228636,"about_ca_topic_score_gemma":0.00000630982,"domain_scores_codex":[0.9981426,0.00003423097,0.0006120558,0.0004863819,0.0003287728,0.0003959425],"domain_scores_gemma":[0.9981768,0.00001471428,0.0007342448,0.000754269,0.000163849,0.0001561728],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001551605,0.0002479021,0.0008049159,0.0001160424,0.00003319583,0.00001350548,0.000139669,0.000003631533,0.997865,0.00002636721,0.0004155501,0.000179023],"study_design_scores_gemma":[0.0003607212,0.0001413896,0.0003721913,0.0001033811,0.00004328127,0.0001929815,0.0001185945,0.00002659144,0.9910939,0.0001586478,0.00720301,0.0001852495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937955,0.0002297712,0.001104082,0.000005546458,0.003974052,0.0002731271,0.00008889577,0.00001137541,0.0005176309],"genre_scores_gemma":[0.9989612,0.00001911436,0.0004979977,0.000009219591,0.0001140173,0.00001765277,0.0001526161,0.00002109484,0.0002071268],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00678746,"threshold_uncertainty_score":0.6960449,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01011458208044937,"score_gpt":0.2226433408533784,"score_spread":0.212528758772929,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}