{"id":"W2081372128","doi":"10.1128/jcm.03552-13","title":"Head-to-Head Comparison of Second-Generation Nucleic Acid Amplification Tests for Detection of Chlamydia trachomatis and Neisseria gonorrhoeae on Urine Samples from Female Subjects and Self-Collected Vaginal Swabs","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Memorial University of Newfoundland; St. John’s Health Sciences Centre; Dalhousie University; Centre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-Québec; Queen Elizabeth II Health Sciences Centre; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"U.S. Food and Drug Administration","keywords":"Chlamydia trachomatis; Neisseria gonorrhoeae; Nucleic Acid Amplification Tests; Chlamydiales; Chlamydiaceae; Urine; Biology; Neisseria; Chlamydia; Roche Diagnostics; Virology; Microbiology; Medicine; Internal medicine; Bacteria; Immunology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001468293,0.0001840655,0.0009597011,0.0003312535,0.0001328851,0.00001530045,0.0001510909,0.0004171058,0.00006636274],"category_scores_gemma":[0.002509669,0.0001575586,0.0001409061,0.0001961056,0.0002778869,0.000104413,0.00003979616,0.0005159013,0.000009940748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004110879,"about_ca_system_score_gemma":0.00009972668,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007295306,"about_ca_topic_score_gemma":0.0007228846,"domain_scores_codex":[0.9969359,0.0008704487,0.001551654,0.0003911908,0.0000201027,0.0002307205],"domain_scores_gemma":[0.9957017,0.00223425,0.001137602,0.0002703655,0.0005938249,0.00006228019],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00147169,0.0007657766,0.06503082,0.00004654607,0.0002625879,9.402178e-8,0.0002265503,0.00002349917,0.9125659,0.00003483665,0.0001403903,0.01943125],"study_design_scores_gemma":[0.002047,0.003776853,0.5892352,0.0000351533,0.00007318744,0.00008926184,0.00003581432,0.00004582511,0.4020393,0.0001068093,0.00242163,0.00009393275],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951288,0.0006672535,0.002706907,0.0001741199,0.0007150097,0.0004813561,0.00009470712,0.00001450082,0.00001740184],"genre_scores_gemma":[0.9970043,0.00009653989,0.002503053,0.00004410967,0.0002200711,0.00001354188,0.00007114548,0.00001780983,0.00002945649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5242044,"threshold_uncertainty_score":0.6425052,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08615114019169853,"score_gpt":0.4021150572007549,"score_spread":0.3159639170090563,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}