{"id":"W2081388900","doi":"10.3201/eid1704.101283","title":"Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus","year":2011,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":265,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"ORFS; Biology; Genome; Virology; Genotype; Genetics; Whole genome sequencing; Phylogenetics; Virulence; Gene; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001528503,0.000174839,0.0004667585,0.0001123668,0.0001030241,0.00000705816,0.0002167828,0.00005597891,0.00397665],"category_scores_gemma":[0.00006082613,0.00008288161,0.0004264071,0.0008346306,0.0001171051,0.0000885028,0.000130694,0.00005569432,0.00003347965],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002499067,"about_ca_system_score_gemma":0.000009654732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005336772,"about_ca_topic_score_gemma":0.0007145174,"domain_scores_codex":[0.9987232,0.0001165951,0.0004275869,0.0003040932,0.0001381638,0.0002903632],"domain_scores_gemma":[0.9992799,0.0001016561,0.0003014787,0.000106601,0.000073576,0.0001367923],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001537787,0.0005007512,0.9731652,0.0000243426,0.001149245,0.000004869827,0.0001430095,0.0002364283,0.02015841,0.0008380804,0.0008284627,0.002797494],"study_design_scores_gemma":[0.0001114181,0.0002141544,0.9949465,0.000007340427,0.001208709,2.078667e-7,0.00007017788,0.0004855075,0.0001371423,0.0004474114,0.002202792,0.0001686283],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947596,0.0005101045,0.00003405771,0.0000662023,0.0001042911,0.0001293955,0.0001786769,0.00008309248,0.004134549],"genre_scores_gemma":[0.9993352,0.0001766852,0.0000134323,0.0001683609,0.00008811394,0.00001306682,0.00006710561,0.000001980555,0.0001360879],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02178138,"threshold_uncertainty_score":0.9969339,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02216922738300493,"score_gpt":0.2277817771358733,"score_spread":0.2056125497528684,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}