{"id":"W2082356887","doi":"10.1016/j.femsec.2004.01.011","title":"Two distinct gene clusters encode pyrene degradation in Mycobacterium sp. strain S65","year":2004,"lang":"en","type":"article","venue":"FEMS Microbiology Ecology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; McGill University; National Research Council Canada; Biotechnology Research Institute","funders":"","keywords":"Dioxygenase; Fluoranthene; Phenanthrene; Pyrene; Biology; Biochemistry; Gene cluster; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003227137,0.000227405,0.0002808512,0.0000891111,0.00008892685,0.0000138949,0.0002932736,0.0002845269,0.002638294],"category_scores_gemma":[0.00005209823,0.0002117862,0.0000597757,0.0002366681,0.0003915514,0.0001057543,0.0001957591,0.0002139108,0.001569069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005403859,"about_ca_system_score_gemma":0.00005044105,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005259908,"about_ca_topic_score_gemma":0.02545761,"domain_scores_codex":[0.9982712,0.0001517427,0.0004291302,0.0005328766,0.00004423729,0.0005707752],"domain_scores_gemma":[0.9994603,0.00004823753,0.0001703592,0.0002184975,0.000009771241,0.00009279433],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003699474,0.0001155612,0.1178971,0.000002147237,0.000008048049,0.00002081311,0.0001418127,0.0002991368,0.8803681,0.00001991683,0.000440893,0.0006495003],"study_design_scores_gemma":[0.003585665,0.0002960221,0.8364214,0.000009701023,0.000017962,0.0001986871,0.00008431558,0.00003388087,0.1514181,0.0003511829,0.007049444,0.000533618],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965768,0.00001511664,0.0001318157,0.001089159,0.0008308138,0.0003248481,0.0001899854,0.00004762098,0.0007938066],"genre_scores_gemma":[0.9959608,0.00002502584,0.001735486,0.001255805,0.00006292104,0.00001073632,0.0006771245,0.00001513422,0.0002569669],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.72895,"threshold_uncertainty_score":0.9992083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0087619478671931,"score_gpt":0.2184696347767825,"score_spread":0.2097076869095894,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}