{"id":"W2082560725","doi":"10.1111/j.1550-7408.2011.00613.x","title":"Factors Affecting Codon Bias in the Mitochondrial Genomes of the Streptophyte <i><scp>M</scp>esostigma viride</i> and the Chlorophyte <i><scp>C</scp>hlamydomonas reinhardtii</i>","year":2012,"lang":"en","type":"article","venue":"Journal of Eukaryotic Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Codon usage bias; Mitochondrial DNA; Context (archaeology); Genome; Genetics; Selection (genetic algorithm); Mutation; Green algae; Gene; Negative selection; Evolutionary biology; Algae; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002004543,0.0001808297,0.0002078708,0.0006312326,0.0002687195,0.000368392,0.0001219594,0.000245648,0.0005296645],"category_scores_gemma":[0.0007772627,0.0001021614,0.0002078096,0.0005572452,0.000274439,0.0001797542,0.0002133297,0.0002466944,0.0001849032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003111938,"about_ca_system_score_gemma":0.0002550556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00124988,"about_ca_topic_score_gemma":0.00312929,"domain_scores_codex":[0.9997974,0.00004128425,0.00002002304,0.00007008605,0.00004159305,0.00002958677],"domain_scores_gemma":[0.999395,0.0001790493,0.0002548459,0.00003244665,0.00005343975,0.00008520945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004609587,0.00002342501,0.09006906,0.0001125101,0.00008573329,0.0002472765,0.0002788327,0.000526194,0.9027296,0.0003939896,0.00003597964,0.005036433],"study_design_scores_gemma":[0.00001292675,0.0001538877,0.9443,0.00001883208,0.0001218816,0.0007450096,0.0004424724,0.001758513,0.05111172,0.0003849498,0.000928728,0.00002102762],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993568,0.0001612408,0.000190665,0.000009482815,0.000001525458,0.000001559682,0.0000966526,0.000004188843,0.0001778809],"genre_scores_gemma":[0.9994272,0.00006233104,0.0001942928,0.00001094076,0.000001438642,0.000002038837,0.0002330124,0.000004201413,0.00006462103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00124988,"threshold_uncertainty_score":0.002485156,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01938449530959323,"score_gpt":0.2272798315669895,"score_spread":0.2078953362573963,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}