{"id":"W2082724614","doi":"10.1371/journal.pone.0059001","title":"Evolution of Red Algal Plastid Genomes: Ancient Architectures, Introns, Horizontal Gene Transfer, and Taxonomic Utility of Plastid Markers","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":151,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Science Council; Canadian Institute for Advanced Research","keywords":"Plastid; Biology; Genome; Evolutionary biology; Horizontal gene transfer; Phylogenetics; Genetics; Gene; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003291637,0.0002995566,0.0002524266,0.0006819856,0.0002964855,0.0006770255,0.0002339252,0.0003284618,0.0004770463],"category_scores_gemma":[0.00064617,0.0001478512,0.000253626,0.0009393615,0.000204472,0.000494246,0.0003831741,0.0003576586,0.0003039101],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003084877,"about_ca_system_score_gemma":0.0002337207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001089642,"about_ca_topic_score_gemma":0.001866072,"domain_scores_codex":[0.9998457,0.00001813683,0.000009013072,0.00006506392,0.00004552436,0.00001639995],"domain_scores_gemma":[0.9995512,0.0001144468,0.0001373453,0.00007713699,0.00007296083,0.00004686308],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002574671,0.00002514625,0.06690775,0.0002230408,0.00007998919,0.0001555185,0.0005443104,0.001420209,0.8968504,0.0006152841,0.00008518915,0.03283564],"study_design_scores_gemma":[0.00001476371,0.0002120805,0.8468997,0.0001179618,0.0002139463,0.001392572,0.0008002937,0.008266802,0.128968,0.001690954,0.01136736,0.00005549105],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992231,0.001755259,0.004184566,0.00005767707,0.000004123706,0.000004370131,0.0009081464,0.00007017856,0.0007847661],"genre_scores_gemma":[0.9881788,0.00105366,0.007773954,0.00005794341,0.000005424165,0.000008730776,0.00227371,0.00003811985,0.0006096556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001089642,"threshold_uncertainty_score":0.002238214,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01267694091142102,"score_gpt":0.1766860236537636,"score_spread":0.1640090827423426,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}