{"id":"W2082724614","doi":"10.1371/journal.pone.0059001","title":"Evolution of Red Algal Plastid Genomes: Ancient Architectures, Introns, Horizontal Gene Transfer, and Taxonomic Utility of Plastid Markers","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":151,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Science Council; Canadian Institute for Advanced Research","keywords":"Plastid; Biology; Genome; Evolutionary biology; Horizontal gene transfer; Phylogenetics; Genetics; Gene; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000937277,0.0001517137,0.0002663681,0.00004715712,0.00004377576,0.000005157664,0.0001126743,0.0000890662,0.00002501893],"category_scores_gemma":[0.00003587827,0.0001457226,0.00006330478,0.00004156083,0.0001878718,8.446336e-7,0.0000893531,0.00006260599,0.000001208323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001657175,"about_ca_system_score_gemma":0.00006170979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001174655,"about_ca_topic_score_gemma":0.00004533607,"domain_scores_codex":[0.9990664,0.00004145641,0.0002821285,0.0002943638,0.0001160578,0.0001996287],"domain_scores_gemma":[0.9995326,0.00002009795,0.00006973885,0.0002211109,0.00008160423,0.00007484735],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002373178,0.0002616382,0.02280125,0.00008277675,0.0002977388,1.684324e-7,0.00003267904,0.00002362986,0.9754936,0.000006805908,0.0001923278,0.0005701414],"study_design_scores_gemma":[0.0007546493,0.000814541,0.4024387,0.00002343523,0.0000887069,0.000002968533,0.00007898222,0.0003883004,0.595037,0.00003892201,0.0001712061,0.0001626019],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942497,0.004506081,0.0003147254,0.00003037247,0.00003989652,0.0003950362,0.0001917895,0.000002683718,0.0002697017],"genre_scores_gemma":[0.9969022,0.0003975883,0.002516329,0.000009596311,0.00007244685,0.00004050627,0.00003180982,0.00001307703,0.00001647901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3804566,"threshold_uncertainty_score":0.5942397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01267694091142102,"score_gpt":0.1766860236537636,"score_spread":0.1640090827423426,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}