{"id":"W2083006984","doi":"10.1371/journal.pbio.0030187","title":"Determination of Stromal Signatures in Breast Carcinoma","year":2005,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Soft tissue tumor case studies","field":"Medicine","cited_by":196,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver General Hospital","funders":"National Cancer Institute; National Institutes of Health; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Biology; Stromal cell; Immunohistochemistry; Gene expression; In situ hybridization; Tissue microarray; Pathology; Extracellular matrix; Gene expression profiling; Stroma; Microarray analysis techniques; Connective tissue; Gene; Comparative genomic hybridization; Microarray; Cancer research; Chromosome; Genetics; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001482122,0.0001172299,0.0001651536,0.001262664,0.0002531042,0.0002284198,0.0001022835,0.0001470737,0.0006620314],"category_scores_gemma":[0.0003808171,0.000091341,0.00008498802,0.0004708132,0.0001924626,0.00009691234,0.0001704099,0.00009325321,0.0001824386],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000243891,"about_ca_system_score_gemma":0.00009959745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008240239,"about_ca_topic_score_gemma":0.001506214,"domain_scores_codex":[0.9998409,0.00002717272,0.00001227037,0.00003324429,0.00005859179,0.00002781501],"domain_scores_gemma":[0.9998519,0.00004037664,0.00004110755,0.00001541655,0.00002617451,0.00002495456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005873506,0.00007563699,0.2092981,0.0001112237,0.00003017404,0.00358829,0.0005259725,0.0002882028,0.7651896,0.0003568039,0.0001894581,0.01975916],"study_design_scores_gemma":[0.00002150282,0.0003295713,0.7551013,0.00002239544,0.00005209291,0.02534274,0.000843038,0.002786772,0.2095318,0.0007217202,0.005225606,0.0000214528],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987696,0.0002495256,0.0002855659,0.00001660704,0.000001533024,0.00000561189,0.00009346935,0.00000680439,0.0005712635],"genre_scores_gemma":[0.9982718,0.0002115252,0.0008500831,0.00001451459,0.000003881798,0.00001375032,0.0002775429,0.000003130553,0.0003536687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001262664,"threshold_uncertainty_score":0.00221473,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0188910262792578,"score_gpt":0.2812167615864296,"score_spread":0.2623257353071718,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}