{"id":"W2083121321","doi":"10.1128/jb.00481-08","title":"A Functional Phenylacetic Acid Catabolic Pathway Is Required for Full Pathogenicity of <i>Burkholderia cenocepacia</i> in the <i>Caenorhabditis elegans</i> Host Model","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":85,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Manitoba Health Research Council; University of Minnesota","keywords":"Biology; Burkholderia cenocepacia; Mutant; Caenorhabditis elegans; Transposon mutagenesis; Virulence; Burkholderia; Microbiology; Transposable element; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006607457,0.0002271931,0.0005402961,0.0001165041,0.0001308004,0.00001293692,0.0004377008,0.0002129933,0.00002018559],"category_scores_gemma":[0.0003466567,0.0001679953,0.0003049865,0.0001439694,0.0003591877,0.00002212963,0.0001283742,0.0002363518,0.000001886155],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003599494,"about_ca_system_score_gemma":0.0004688481,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001402267,"about_ca_topic_score_gemma":0.00004541706,"domain_scores_codex":[0.9980759,0.0002350945,0.0007401502,0.0002784939,0.0002371938,0.0004331656],"domain_scores_gemma":[0.9985305,0.00007288837,0.0005121811,0.0003484319,0.0004495695,0.00008641533],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001272979,0.0001591458,0.001025032,0.0000356843,0.0001136771,0.0000205676,0.0005326767,0.00004256034,0.9916295,0.00002626384,0.004952615,0.0001892277],"study_design_scores_gemma":[0.006488476,0.004784648,0.06181683,0.00006926501,0.00009377766,0.00266532,0.0004629715,0.0002468503,0.8931292,0.0004172841,0.02927942,0.0005459061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940588,0.001300718,0.002670893,0.0009793855,0.000242761,0.0002982353,0.0003797316,0.00000291908,0.00006649414],"genre_scores_gemma":[0.9959334,0.001374696,0.001249359,0.0007454119,0.0004927887,0.00004052362,0.00007110126,0.0000248338,0.00006789988],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09850032,"threshold_uncertainty_score":0.6850651,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0289580435743115,"score_gpt":0.2582931810917854,"score_spread":0.2293351375174739,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}