{"id":"W2083266173","doi":"10.1093/nar/gkp823","title":"Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing","year":2009,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Vetenskapsrådet; Uppsala Universitet; Knut och Alice Wallenbergs Stiftelse; BC Cancer Agency; Stiftelsen för Strategisk Forskning; Canada's Michael Smith Genome Sciences Centre","keywords":"FOXA2; Biology; Promoter; Gene; Transcription (linguistics); Transcription factor; DNA; DNA sequencing; Binding site; Genetics; DNA binding site; Gene expression; Molecular biology; Physics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005493112,0.0001773661,0.0001777491,0.00009257338,0.0003787428,0.0000997766,0.0003422158,0.0001667508,0.00006262547],"category_scores_gemma":[0.00009177908,0.0001868744,0.00008447545,0.0001596244,0.0001650383,0.00001440676,0.000416615,0.0002901861,0.00003880503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001701339,"about_ca_system_score_gemma":0.00008916348,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002551997,"about_ca_topic_score_gemma":0.00003129071,"domain_scores_codex":[0.9980981,0.000139989,0.0003132718,0.0005257198,0.0003973894,0.0005255092],"domain_scores_gemma":[0.9989952,0.00002251024,0.00007492765,0.000604627,0.0001556751,0.0001470744],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002929673,0.0000301923,0.003934685,0.00001872348,0.00006414859,0.00001058478,0.0001699041,0.00001427794,0.9903768,0.0004339729,0.001655137,0.00326223],"study_design_scores_gemma":[0.001716233,0.000934286,0.113288,0.00009928217,0.00005895415,0.00007325485,0.0008381241,0.001109674,0.8353971,0.008210044,0.03748624,0.000788849],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934735,0.0003339362,0.0003656009,0.0003574209,0.00007774709,0.0002642196,0.00002152638,0.00001731237,0.005088772],"genre_scores_gemma":[0.9963312,0.0001729193,0.001346956,0.0001604412,0.0001738938,0.00001408955,0.0001584855,0.00003432662,0.001607681],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1549798,"threshold_uncertainty_score":0.7620516,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03462198678276101,"score_gpt":0.3362388370451784,"score_spread":0.3016168502624174,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}