{"id":"W2083266173","doi":"10.1093/nar/gkp823","title":"Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing","year":2009,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Vetenskapsrådet; Uppsala Universitet; Knut och Alice Wallenbergs Stiftelse; BC Cancer Agency; Stiftelsen för Strategisk Forskning; Canada's Michael Smith Genome Sciences Centre","keywords":"FOXA2; Biology; Promoter; Gene; Transcription (linguistics); Transcription factor; DNA; DNA sequencing; Binding site; Genetics; DNA binding site; Gene expression; Molecular biology; Physics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004343243,0.0003244213,0.0003577205,0.0005531304,0.0003022516,0.0003119599,0.0002997523,0.0002129385,0.001814623],"category_scores_gemma":[0.000509405,0.0002793329,0.0003068773,0.0003004911,0.0002627158,0.0001984128,0.0003751888,0.0003009413,0.0005248054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003629508,"about_ca_system_score_gemma":0.0002775839,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003424094,"about_ca_topic_score_gemma":0.008430546,"domain_scores_codex":[0.9997913,0.0000300424,0.000007566056,0.00005863154,0.00007348763,0.00003900599],"domain_scores_gemma":[0.9998075,0.00008123835,0.00002931972,0.00002045301,0.00003016228,0.00003132713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009264079,0.000008968599,0.004363485,0.00006442474,0.00002885468,0.00002460432,0.00002973374,0.0002265291,0.9915447,0.00009460753,0.00004379857,0.003477611],"study_design_scores_gemma":[0.0000203465,0.00007722111,0.1013826,0.0000137165,0.00007998831,0.0002207226,0.00009106006,0.009031015,0.8843842,0.0002435876,0.00443932,0.00001610114],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9784561,0.001740705,0.01767452,0.00005571194,0.00001023436,0.00002744806,0.001041127,0.0001283656,0.0008657573],"genre_scores_gemma":[0.9556109,0.0007164511,0.03787641,0.00008164361,0.000007140044,0.0001083948,0.002931213,0.00006367567,0.002604121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003424094,"threshold_uncertainty_score":0.006808341,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03462198678276101,"score_gpt":0.3362388370451784,"score_spread":0.3016168502624174,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}