{"id":"W2083358713","doi":"10.1128/jvi.01115-08","title":"Human Immunodeficiency Virus (HIV) Type 1 Proviral Hypermutation Correlates with CD4 Count in HIV-Infected Women from Kenya","year":2008,"lang":"en","type":"article","venue":"Journal of Virology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Somatic hypermutation; APOBEC; APOBEC3G; Biology; Virology; Provirus; Cytidine deaminase; Viral quasispecies; Virus; Viral replication; Genetics; Immunology; Genome; Antibody; Gene; Hepatitis C virus; B cell","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002505321,0.0003600452,0.0003252339,0.0007581952,0.0009259873,0.0004374993,0.00024931,0.0005738258,0.002544708],"category_scores_gemma":[0.001720546,0.0004720224,0.0001676649,0.000539384,0.000329957,0.0003280168,0.0002609061,0.0005526082,0.000338141],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000317343,"about_ca_system_score_gemma":0.0002646551,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008965804,"about_ca_topic_score_gemma":0.009897891,"domain_scores_codex":[0.9998355,0.00003803251,0.0000137445,0.00003350508,0.00003170972,0.00004755673],"domain_scores_gemma":[0.999599,0.0001080764,0.0001187162,0.00001821568,0.00004283497,0.000113191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003367638,0.00007170615,0.9944522,0.00002780815,0.00002541512,0.0008055776,0.0003206037,0.00001704366,0.002094229,0.00001955842,0.0001771045,0.001651958],"study_design_scores_gemma":[0.00001344015,0.0001563351,0.9972651,0.00001574521,0.00002635321,0.00170991,0.0002796981,0.00006539156,0.0001355796,0.00001537633,0.0003126749,0.000004388832],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985211,0.0005506891,0.00003643078,0.00006239979,0.000008236431,0.00001858372,0.0001422957,0.000004614134,0.0006557179],"genre_scores_gemma":[0.9991424,0.0002571866,0.00007307775,0.00003951392,0.00001421176,0.00001216213,0.0001245316,0.000002133545,0.0003348395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008965804,"threshold_uncertainty_score":0.01782721,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01117092489530307,"score_gpt":0.242249660248517,"score_spread":0.2310787353532139,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}