{"id":"W2083739951","doi":"10.1371/journal.pone.0004510","title":"Salmonella paratyphi C: Genetic Divergence from Salmonella choleraesuis and Pathogenic Convergence with Salmonella typhi","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":104,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Peking University Health Science Center; Specialized Research Fund for the Doctoral Program of Higher Education of China; Peking University; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Harbin Medical University","keywords":"Salmonella; Biology; Salmonella typhi; Typhoid fever; Microbiology; Virology; Genetics; Plasmid; Pseudogene; Gene; Genome; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000249337,0.0005047084,0.0007576263,0.00003045604,0.0003132825,0.00008531545,0.0005521195,0.0003072432,0.0008750295],"category_scores_gemma":[0.00008636182,0.0002361206,0.0001156185,0.0004863756,0.0002349365,0.0001495885,0.0001280924,0.0003338252,0.0003199214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003571227,"about_ca_system_score_gemma":0.00001913286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003966133,"about_ca_topic_score_gemma":0.0001491839,"domain_scores_codex":[0.9967482,0.0002660818,0.0005683021,0.001124376,0.0004922926,0.0008007565],"domain_scores_gemma":[0.9984437,0.0004126646,0.0002605594,0.0002942377,0.0001459567,0.0004428446],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002550149,0.00073035,0.3403749,0.00001113353,0.0001462434,0.00007001777,0.000149047,0.00001071934,0.6479572,0.00005622023,0.0002857838,0.009953397],"study_design_scores_gemma":[0.000400235,0.00107938,0.9819753,0.0001059791,0.0002018852,0.00002791792,0.0001156174,0.0003420955,0.01286754,0.001749692,0.0004403581,0.0006939713],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932744,0.003859843,0.00001748762,0.001169701,0.00008925072,0.0004596181,0.000119555,0.0001850323,0.0008251313],"genre_scores_gemma":[0.9933584,0.003028161,0.001285962,0.001309156,0.0004939463,0.00003042619,0.0001135226,0.000006248565,0.0003741815],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6416004,"threshold_uncertainty_score":0.9628719,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03577392635289501,"score_gpt":0.1971602989617186,"score_spread":0.1613863726088236,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}