{"id":"W2083739951","doi":"10.1371/journal.pone.0004510","title":"Salmonella paratyphi C: Genetic Divergence from Salmonella choleraesuis and Pathogenic Convergence with Salmonella typhi","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":104,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Peking University Health Science Center; Specialized Research Fund for the Doctoral Program of Higher Education of China; Peking University; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Harbin Medical University","keywords":"Salmonella; Biology; Salmonella typhi; Typhoid fever; Microbiology; Virology; Genetics; Plasmid; Pseudogene; Gene; Genome; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002272885,0.000330785,0.0002514099,0.0006239578,0.0003252224,0.0002848599,0.0002545789,0.0004334216,0.0009227427],"category_scores_gemma":[0.0005923395,0.0001274505,0.0002411088,0.0006478362,0.0003763088,0.0001740111,0.0003356711,0.0004686713,0.0001537757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000373143,"about_ca_system_score_gemma":0.000462732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00282226,"about_ca_topic_score_gemma":0.002636941,"domain_scores_codex":[0.999804,0.00002953025,0.00001950721,0.00005678247,0.00004495617,0.00004521376],"domain_scores_gemma":[0.9993545,0.0001354566,0.0002343718,0.0000411285,0.00008888933,0.0001456282],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001812161,0.0001856076,0.3618492,0.000264635,0.0001146524,0.001486273,0.0006849553,0.0005321135,0.621868,0.0003652943,0.0001328704,0.01070412],"study_design_scores_gemma":[0.00003768342,0.0003743094,0.9799322,0.00002631416,0.00006986741,0.002476143,0.0006866491,0.0009867022,0.01426028,0.0002756191,0.0008545908,0.00001958567],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994511,0.00008846574,0.0001128911,0.00002174108,0.0000021194,0.000003628036,0.00005539425,0.000003245068,0.0002614518],"genre_scores_gemma":[0.9991266,0.00007040655,0.0004094811,0.00002926055,0.000003964432,0.000004295638,0.0002798824,0.000004297605,0.00007176261],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00282226,"threshold_uncertainty_score":0.005611718,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03577392635289501,"score_gpt":0.1971602989617186,"score_spread":0.1613863726088236,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}