{"id":"W2084089214","doi":"10.1074/jbc.m502477200","title":"Identification of Mammalian Proteins Cross-linked to DNA by Ionizing Radiation","year":2005,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Alberta Cancer Foundation","funders":"","keywords":"Ionizing radiation; Identification (biology); DNA; Computational biology; Biology; Genetics; Physics; Irradiation; Nuclear physics; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001858242,0.0005702334,0.0004749041,0.0007196232,0.0003112832,0.0002830089,0.0003252724,0.0005095495,0.0009494183],"category_scores_gemma":[0.0001795648,0.0001943808,0.0005910204,0.0007192074,0.0001820415,0.0002554739,0.0002563198,0.0004850823,0.0008576388],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003241706,"about_ca_system_score_gemma":0.0001965792,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006131206,"about_ca_topic_score_gemma":0.0008062987,"domain_scores_codex":[0.9998498,0.0000149922,0.00001565104,0.00005237975,0.00004381729,0.00002328833],"domain_scores_gemma":[0.9998657,0.00002228258,0.00003865456,0.00001570847,0.00003378898,0.00002401687],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004193638,0.00001067262,0.000361144,0.00007303079,0.00001110302,0.00007691413,0.00001467135,0.00001349199,0.9985089,0.00002733616,0.00003738435,0.0008235639],"study_design_scores_gemma":[0.00001591001,0.0003253497,0.09078279,0.00003247119,0.0001081068,0.002097093,0.000110036,0.001091168,0.8916649,0.0001149581,0.01364295,0.00001419786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.96858,0.009504947,0.0145022,0.0002883607,0.00009262133,0.0001492201,0.00418625,0.0001939051,0.002502435],"genre_scores_gemma":[0.871577,0.01862424,0.06670915,0.0008000713,0.0001285886,0.0004014966,0.0285133,0.0001632952,0.01308274],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009494183,"threshold_uncertainty_score":0.003176093,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01351508834710406,"score_gpt":0.2716202423068944,"score_spread":0.2581051539597903,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}