{"id":"W2084120324","doi":"10.1371/journal.pbio.0050244","title":"Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota","year":2007,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1056,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Wellcome Trust; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Salmonella enterica; Microbiology; Colonisation resistance; Pathogen; Immune system; Salmonella; Colonization; Pathogenicity island; Microbiome; Inflammation; Colitis; Immunology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002370711,0.0001705817,0.0001532795,0.00005589929,0.0001166053,0.00001444098,0.0002603874,0.0001381987,0.00002411208],"category_scores_gemma":[0.0000366781,0.0001132715,0.00003817746,0.000132014,0.0001167346,0.000002250854,0.0001399522,0.0001358385,0.000102858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002149303,"about_ca_system_score_gemma":0.00005698959,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002423164,"about_ca_topic_score_gemma":0.0002076714,"domain_scores_codex":[0.9989318,0.0000732148,0.0002083944,0.0003445193,0.00004376961,0.0003982891],"domain_scores_gemma":[0.9993296,0.00002980232,0.00009223048,0.0003259099,0.0001169478,0.0001054659],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002298061,0.00003767419,0.005731025,0.00001527468,0.00003677581,0.000002607222,0.0001219195,0.000003552326,0.9915903,0.0001049558,0.001568011,0.0005580536],"study_design_scores_gemma":[0.000630867,0.001595898,0.04089284,0.00003843458,0.00002912421,0.0001391131,0.000202605,0.000006747016,0.8196388,0.00002019103,0.1364739,0.0003313931],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919125,0.0001162737,0.004686866,0.00223419,0.0001012929,0.0003293471,0.00001443195,0.00002314417,0.0005819314],"genre_scores_gemma":[0.9938837,0.00002646776,0.00341226,0.001833199,0.0003662343,0.00001409725,0.0001634406,0.00002199078,0.0002786499],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1719515,"threshold_uncertainty_score":0.461908,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01150483330565448,"score_gpt":0.2493823760684696,"score_spread":0.2378775427628151,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}