{"id":"W2084153581","doi":"10.1089/aid.2011.0223","title":"HIV Type 1 <i>gag</i> Genetic Diversity Among Antenatal Clinic Attendees in North Rift Valley, Kenya","year":2011,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Virology; Amplicon; Polymerase chain reaction; Genetic diversity; Biology; Population; V3 loop; Immunology; Medicine; Antibody; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006341265,0.0002085635,0.0003290849,0.0004998863,0.0009285993,0.00004148764,0.0004942146,0.0001919288,0.002396023],"category_scores_gemma":[0.0001658544,0.0001729046,0.00007359136,0.0004069474,0.001483607,0.0001871035,0.001014393,0.000882192,0.002552139],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007081258,"about_ca_system_score_gemma":0.0001002121,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004706545,"about_ca_topic_score_gemma":0.007553968,"domain_scores_codex":[0.997357,0.0005271251,0.0002864611,0.0005540667,0.0001928454,0.001082486],"domain_scores_gemma":[0.9989266,0.0002346927,0.00005048788,0.0004312959,0.0001946693,0.0001622315],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004831535,0.0004565197,0.9915632,0.00002574596,0.0001707978,0.0003741733,0.0008996213,3.826867e-8,0.0007805417,0.0001887516,0.004290306,0.0007671748],"study_design_scores_gemma":[0.001732634,0.003006579,0.9916176,0.000026309,0.00001421697,0.00001606675,0.0004863932,8.016994e-8,0.0009333364,0.0003458277,0.001649535,0.0001714792],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991773,0.002004878,0.000001941866,0.00001724268,0.00007609507,0.0003599869,0.00009861083,0.00004559026,0.005622655],"genre_scores_gemma":[0.992832,0.001016677,0.00005595994,0.0000290803,0.00003256675,0.00002323315,0.0001211586,0.00001999985,0.005869305],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002847423,"threshold_uncertainty_score":0.9985159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1048059700305737,"score_gpt":0.3262626502831605,"score_spread":0.2214566802525868,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}