{"id":"W2084455604","doi":"10.1186/1471-2105-10-115","title":"Most parsimonious haplotype allele sharing determination","year":2009,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Agricultural Research Institute","keywords":"Haplotype; Genetics; Pedigree chart; Single-nucleotide polymorphism; Biology; Allele; Haplotype estimation; Genetic association; Linkage disequilibrium; Genotype; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002332998,0.000116775,0.0001254857,0.0000392672,0.00009904136,0.00002579306,0.0001787025,0.0001697586,0.00001127605],"category_scores_gemma":[0.0002491477,0.0001116491,0.00005156889,0.00009023341,0.00002401235,0.000006873639,0.0000585724,0.00006020573,0.0000532119],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001825637,"about_ca_system_score_gemma":0.00005193169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005056881,"about_ca_topic_score_gemma":0.00002865797,"domain_scores_codex":[0.9991961,0.00001905749,0.0003202677,0.000135558,0.00008399863,0.0002449814],"domain_scores_gemma":[0.999407,0.0000127113,0.0001464431,0.0002843772,0.00008676572,0.0000627057],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002589242,0.0006958804,0.4044702,0.0002581583,0.0002318031,0.000006932034,0.001867243,0.02264969,0.02681392,0.004836153,0.1150083,0.4229028],"study_design_scores_gemma":[0.001458843,0.001123729,0.2802877,0.0000232564,0.00006147159,0.00005085677,0.0005111862,0.6514691,0.003856054,0.00244273,0.05789643,0.0008186227],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6427387,0.0003777608,0.3321328,0.000497779,0.0002547901,0.0004117368,0.00002331606,0.0000812699,0.02348184],"genre_scores_gemma":[0.8253801,0.0001602495,0.1712606,0.001613177,0.0001819647,0.000009750383,0.0004176957,0.00001366716,0.0009628225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6288194,"threshold_uncertainty_score":0.4552919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01855987131325696,"score_gpt":0.2684991002398948,"score_spread":0.2499392289266378,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}