{"id":"W2084477091","doi":"10.1371/journal.pgen.1005000","title":"Transcriptome Wide Annotation of Eukaryotic RNase III Reactivity and Degradation Signals","year":2015,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Université de Sherbrooke","keywords":"Transcriptome; Biology; RNA; RNase P; Ribonuclease III; Gene expression; Ribonuclease; RNase H; RNA silencing; Genetics; Gene; Cell biology; Computational biology; RNA interference","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001925147,0.000472166,0.0005164241,0.0008646799,0.0003551689,0.0005721994,0.00015732,0.0002657406,0.001282039],"category_scores_gemma":[0.0003303467,0.0001665209,0.0004716621,0.001094735,0.0001296819,0.0002057236,0.000394769,0.0005886623,0.0009672029],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002606679,"about_ca_system_score_gemma":0.0004152542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005917642,"about_ca_topic_score_gemma":0.0009507788,"domain_scores_codex":[0.9998073,0.00001779939,0.00001650321,0.00008491793,0.00004210479,0.00003152724],"domain_scores_gemma":[0.9997506,0.00004689705,0.00007686882,0.0000282904,0.00005991176,0.00003745097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001909242,0.00001261382,0.004005392,0.0002678423,0.00002275911,0.0001702782,0.00008073723,0.0002934525,0.9845829,0.0001654088,0.0004111672,0.009796492],"study_design_scores_gemma":[0.00003695293,0.0002973046,0.35158,0.0001689662,0.0003239401,0.001780677,0.0003747668,0.007619116,0.5765259,0.001127641,0.06008152,0.00008319502],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8380515,0.008764809,0.05285043,0.0002687656,0.0001200909,0.0001152315,0.09161405,0.002099499,0.006115606],"genre_scores_gemma":[0.7279161,0.005548238,0.07665837,0.0002520095,0.00008605351,0.0002615459,0.1828732,0.0008230825,0.005581445],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001282039,"threshold_uncertainty_score":0.004288852,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03927646192299931,"score_gpt":0.2793037054879297,"score_spread":0.2400272435649304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}