{"id":"W2084477091","doi":"10.1371/journal.pgen.1005000","title":"Transcriptome Wide Annotation of Eukaryotic RNase III Reactivity and Degradation Signals","year":2015,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Université de Sherbrooke","keywords":"Transcriptome; Biology; RNA; RNase P; Ribonuclease III; Gene expression; Ribonuclease; RNase H; RNA silencing; Genetics; Gene; Cell biology; Computational biology; RNA interference","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001785281,0.00008224775,0.0001067912,0.00004232285,0.00002792997,0.00001366612,0.00007163803,0.00006893203,0.000002590751],"category_scores_gemma":[0.000140664,0.00008062227,0.00002624062,0.00006855082,0.00005782003,0.000005630708,0.00002867367,0.0000510381,0.000001493375],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009172705,"about_ca_system_score_gemma":0.00007498849,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001759088,"about_ca_topic_score_gemma":0.00002576186,"domain_scores_codex":[0.9992828,0.00006300268,0.0001501227,0.0001706134,0.0001877211,0.0001456756],"domain_scores_gemma":[0.9994779,0.00001812244,0.0000577509,0.0001654668,0.0001539868,0.000126731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009008023,0.000063489,0.008369659,0.00002091759,0.00002591484,0.000001947024,0.00007992751,0.0001077849,0.9889449,0.00001079586,0.0001952249,0.002089382],"study_design_scores_gemma":[0.0006308307,0.0003649774,0.004543359,0.00001240738,0.00002174424,0.000003773259,0.00008763887,0.002936139,0.9909146,0.0001213568,0.0002690403,0.00009412967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964135,0.001018876,0.002077389,0.00008480679,0.00002453543,0.0001555977,0.00001099123,0.000005431236,0.0002089213],"genre_scores_gemma":[0.9985186,0.0002185207,0.0008272637,0.00005094973,0.00004497771,0.000006957852,0.00005666052,0.00001191875,0.0002641721],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003826299,"threshold_uncertainty_score":0.3287681,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03927646192299931,"score_gpt":0.2793037054879297,"score_spread":0.2400272435649304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}