{"id":"W2084705961","doi":"10.1371/journal.pone.0028547","title":"Community-Based Outbreaks in Vulnerable Populations of Invasive Infections Caused by Streptococcus pneumoniae Serotypes 5 and 8 in Calgary, Canada","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; Alberta Children's Hospital; University of Calgary; Alberta Health Services","funders":"Children's Hospital Foundation; Alberta Children's Hospital Foundation; Calgary Laboratory Services; GlaxoSmithKline; University of Alberta; Pfizer","keywords":"Multilocus sequence typing; Outbreak; Serotype; Streptococcus pneumoniae; Epidemiology; Genotype; Medicine; Molecular epidemiology; Pneumococcal disease; Typing; Virology; Microbiology; Biology; Internal medicine; Antibiotics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005772967,0.0004990487,0.0003485302,0.001549475,0.003673506,0.001177091,0.001728947,0.0005963905,0.001721833],"category_scores_gemma":[0.001710551,0.0004582666,0.0003108499,0.002623251,0.001109011,0.0004026949,0.001546405,0.0008078164,0.0001382877],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02878077,"about_ca_system_score_gemma":0.03130905,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9930257,"about_ca_topic_score_gemma":0.9949763,"domain_scores_codex":[0.9990022,0.00008731276,0.00005804475,0.0001477421,0.0002574003,0.0004473934],"domain_scores_gemma":[0.9981188,0.0001144464,0.000358133,0.00004504974,0.0006261416,0.0007374641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001221386,0.00006109408,0.990164,0.00005834222,0.00005192703,0.0006045225,0.001798445,0.0001850053,0.0005594252,0.00006099629,0.00102124,0.00531291],"study_design_scores_gemma":[0.0000140056,0.000044136,0.9944296,0.0000381702,0.0000154126,0.0001887088,0.004502546,0.0002763732,0.00006894179,0.00002135413,0.000389227,0.00001138962],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974988,0.0004490994,0.00006894628,0.0001712954,0.000009294619,0.00006202493,0.0009043241,0.000009141439,0.0008269897],"genre_scores_gemma":[0.9984332,0.0003373517,0.000132199,0.0001213131,0.000005226507,0.00001560003,0.0006173944,0.000002650376,0.0003350472],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02878077,"threshold_uncertainty_score":0.20882,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07831524378617323,"score_gpt":0.2526123699641823,"score_spread":0.1742971261780091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}