{"id":"W2084708009","doi":"10.1038/ng.215","title":"Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease","year":2008,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":661,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Montreal Heart Institute; Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute","keywords":"Biology; Genetics; Linkage disequilibrium; Single-nucleotide polymorphism; ATG16L1; Genome-wide association study; Autophagy; Disease; Genetic association; Population; Haplotype; Allele; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007121119,0.0001396531,0.0002246452,0.00009923664,0.00007383472,0.000008460496,0.00006674585,0.0002204097,0.00008846381],"category_scores_gemma":[0.0003307484,0.0001022776,0.00004746843,0.000164862,0.0001271433,0.00003427152,0.00004557225,0.0003334534,0.000002596264],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003297207,"about_ca_system_score_gemma":0.0001430143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001099089,"about_ca_topic_score_gemma":0.000005583396,"domain_scores_codex":[0.9988604,0.0000492479,0.0001572872,0.0002323135,0.0004587185,0.0002420726],"domain_scores_gemma":[0.9989886,0.00008058681,0.00008717721,0.0002709944,0.0002045752,0.0003680312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001314473,0.0004186909,0.9560935,0.0001068834,0.00007202104,0.000428785,0.0001538299,0.000003935224,0.03229905,0.000009217243,0.007790084,0.001309518],"study_design_scores_gemma":[0.001755754,0.0003733394,0.9505684,0.0002484199,0.00008018255,0.00002972624,0.00001182922,0.00005938811,0.04615171,0.00004243483,0.0005705255,0.0001082778],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994597,0.004187468,0.00002559341,0.0004049364,0.00006225058,0.0002962228,0.00007836012,0.00002913764,0.0003191011],"genre_scores_gemma":[0.9966568,0.001672052,0.0007832004,0.0002659636,0.0001550308,0.00001405101,0.000140192,0.00002279464,0.0002898563],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01385265,"threshold_uncertainty_score":0.4170761,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0137175570418332,"score_gpt":0.264120258224963,"score_spread":0.2504027011831298,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}