{"id":"W2085284210","doi":"10.4236/aim.2012.24069","title":"Description of a Putative Oligosaccharyl:S-Layer Protein Transferase from the Tyrosine <i>O</i>-Glycosylation System of <i>Paenibacillus alvei</i> CCM 2051<sup>T</sup>","year":2012,"lang":"en","type":"article","venue":"Advances in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Directorate for Biological Sciences; Austrian Science Fund; Stockholms Universitet; University of Alberta","keywords":"S-layer; Glycosylation; Glycan; Transferase; Biochemistry; Alanine scanning; N-linked glycosylation; Protein tyrosine phosphatase; Biology; Glycoprotein; Tyrosine; Gene; Chemistry; Enzyme; Mutagenesis; Mutant","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007499976,0.0005731753,0.0003105341,0.000324106,0.0001594817,0.0004109898,0.0003395908,0.0004685344,0.000639886],"category_scores_gemma":[0.0001540609,0.0001372737,0.0005664142,0.0003692954,0.0002005973,0.0003074832,0.000243218,0.0005520663,0.0008594799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004186674,"about_ca_system_score_gemma":0.0005959282,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001484929,"about_ca_topic_score_gemma":0.0006475816,"domain_scores_codex":[0.9999411,0.000006397982,0.000008380142,0.00001539658,0.00001581288,0.00001287733],"domain_scores_gemma":[0.9999043,0.00001318026,0.00002754109,0.00001366847,0.0000128016,0.00002854797],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008734348,0.00003230023,0.0006169772,0.00008603265,0.000008510111,0.0002687199,0.00003150494,0.0002139306,0.994741,0.0003666722,0.00004784932,0.003499161],"study_design_scores_gemma":[0.00001939442,0.0003080533,0.008170135,0.00002268493,0.00005447813,0.00162159,0.0001238721,0.002263296,0.9746685,0.0003405023,0.01238454,0.00002300337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9576929,0.001446453,0.03425491,0.0003207644,0.00005795497,0.0001834838,0.003429441,0.0002971173,0.002316996],"genre_scores_gemma":[0.9404129,0.001514902,0.03695392,0.00007429833,0.00001647521,0.0001339973,0.01650528,0.00007283611,0.004315371],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001484929,"threshold_uncertainty_score":0.003037632,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02332990127243709,"score_gpt":0.2640015186999043,"score_spread":0.2406716174274672,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}