{"id":"W2085284210","doi":"10.4236/aim.2012.24069","title":"Description of a Putative Oligosaccharyl:S-Layer Protein Transferase from the Tyrosine <i>O</i>-Glycosylation System of <i>Paenibacillus alvei</i> CCM 2051<sup>T</sup>","year":2012,"lang":"en","type":"article","venue":"Advances in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Directorate for Biological Sciences; Austrian Science Fund; Stockholms Universitet; University of Alberta","keywords":"S-layer; Glycosylation; Glycan; Transferase; Biochemistry; Alanine scanning; N-linked glycosylation; Protein tyrosine phosphatase; Biology; Glycoprotein; Tyrosine; Gene; Chemistry; Enzyme; Mutagenesis; Mutant","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"category_scores_codex":[0.004648516,0.004762837,0.005610178,0.001723171,0.002193094,0.0006785055,0.004636392,0.003241024,0.01408514],"category_scores_gemma":[0.001955538,0.00438027,0.002504888,0.004193717,0.004616515,0.005536449,0.002015553,0.003817891,0.01202824],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003752898,"about_ca_system_score_gemma":0.0005145376,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003704616,"about_ca_topic_score_gemma":0.09162667,"domain_scores_codex":[0.9740272,0.004579475,0.007641803,0.005686463,0.002028048,0.006037012],"domain_scores_gemma":[0.9833279,0.002693219,0.004699707,0.006392892,0.001211487,0.001674771],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002840784,0.002793532,0.002275607,0.0006945491,0.001103755,0.0000131629,0.01514195,0.005080982,0.9477992,0.0004291575,0.01498569,0.006841643],"study_design_scores_gemma":[0.006226991,0.0004986821,0.003928725,0.002364288,0.001639146,0.00111768,0.0005204988,0.00004600414,0.0222322,0.0006889261,0.9557324,0.005004425],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8951403,0.01977523,0.05643823,0.001407033,0.005106943,0.007349566,0.01162894,0.0008967923,0.002256975],"genre_scores_gemma":[0.8797724,0.004587848,0.07175469,0.00115036,0.001899296,0.001644535,0.02124402,0.000907175,0.01703973],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9407467,"threshold_uncertainty_score":0.9991059,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02332990127243709,"score_gpt":0.2640015186999043,"score_spread":0.2406716174274672,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}