{"id":"W2085326075","doi":"10.1371/journal.pone.0000879","title":"Dating Phylogenies with Hybrid Local Molecular Clocks","year":2007,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"University of Ottawa","keywords":"Evolutionary biology; Molecular clock; Biology; Computational biology; Phylogenetics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007549549,0.0007671656,0.0009124767,0.002745257,0.0005330787,0.001732051,0.001822768,0.001164871,0.001850602],"category_scores_gemma":[0.02383402,0.0006321225,0.00105087,0.002609194,0.001305703,0.00209402,0.002003225,0.002048603,0.0006738427],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000861466,"about_ca_system_score_gemma":0.0003706054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007090454,"about_ca_topic_score_gemma":0.0009947333,"domain_scores_codex":[0.9960686,0.002291754,0.0001585154,0.0008944701,0.0005108338,0.00007578534],"domain_scores_gemma":[0.9802005,0.01530281,0.001507056,0.001981403,0.0007890938,0.000219205],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001785577,0.0002549369,0.06189319,0.0007440815,0.001388622,0.0004315031,0.001285888,0.4943508,0.05387708,0.0415299,0.001785754,0.3406727],"study_design_scores_gemma":[0.00008701999,0.000161101,0.01031778,0.00004328697,0.0001720042,0.0005113854,0.0001273666,0.9261218,0.01611858,0.04334963,0.002854939,0.0001351572],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.0915927,0.0002569626,0.9067968,0.00006884408,0.00003118749,0.00003101729,0.0001322401,0.000599126,0.0004911202],"genre_scores_gemma":[0.3718386,0.0001766563,0.625977,0.00005989952,0.00004258634,0.0001894665,0.0005361463,0.000281928,0.0008976497],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.007549549,"threshold_uncertainty_score":0.03992635,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01510037235686986,"score_gpt":0.205636104723671,"score_spread":0.1905357323668012,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}