{"id":"W2085746422","doi":"10.1186/1471-2180-8-227","title":"Genomic analysis of bacteriophage ε34 of Salmonella entericaserovar Anatum (15+)","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Prophage; Biology; Genetics; Bacteriophage; Genome; Gene; Gene cluster; Temperateness; Comparative genomics; Lysogenic cycle; Salmonella; ORFS; Sequence analysis; Genomics; Peptide sequence; Escherichia coli; Bacteria; Open reading frame","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008513101,0.0001547084,0.0004712883,0.0001650605,0.00006192637,0.000003145905,0.0002765462,0.0001105048,0.008013225],"category_scores_gemma":[0.00001289843,0.0001447786,0.0002997909,0.0005052006,0.0004351307,0.00006755689,0.0002217171,0.00009543823,0.0002268361],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007171737,"about_ca_system_score_gemma":0.00001664027,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009913107,"about_ca_topic_score_gemma":0.0006710942,"domain_scores_codex":[0.9988407,0.00009309414,0.0004628029,0.0003231755,0.00003152583,0.0002487043],"domain_scores_gemma":[0.9992123,0.00005682639,0.0002907501,0.000370847,0.00001604168,0.00005327646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000471045,0.0001225487,0.06017159,0.000007615829,0.0001801187,0.000006596643,0.0001859112,0.0001506686,0.9381893,0.000003802364,0.0008453469,0.0000894133],"study_design_scores_gemma":[0.0002707023,0.0001194063,0.840836,0.000005282282,0.0002550784,0.0001411712,0.00003787964,0.00006902267,0.1512671,0.000002291028,0.006833552,0.0001625185],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979396,0.00007561043,0.0004168433,0.00001328054,0.0001754901,0.0001114305,0.0002295496,0.00001441541,0.001023771],"genre_scores_gemma":[0.9965823,0.0000753255,0.002158584,0.00008706863,0.00001510315,0.000003607608,0.0001188282,0.00001212426,0.0009470811],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7869222,"threshold_uncertainty_score":0.9928936,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01478619242618192,"score_gpt":0.2260230501085127,"score_spread":0.2112368576823308,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}